LXL04_006904 | RubberDandelionOmics

Gene overview

LXL04_006904

Reference: OH-1004 Chr: Chr02 Coordinates: 29277900-29293461 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5193 bp · LXL04_006904|LXL04_006904|OH1004|cDNA

ATGCTTCATCTTCCAATTTCACAGAAACGAAAGTTGACTGGAATTGTCAATGGACATCCGCTGCACAATAGCGACGAAACACAAGAACGAGTCAACAAACGAAATTCATCCATTCACTGTCGGAAGTCTGAAGCTATCAACGACACCGATTCATCTTCCTCTTCCTCCTCTGTACTACCAGACCAGACATGTCGACGTTTTACCTTTCCTGAAATTCAATCGGCAACCAATAATTTCGATGAGAATTTAGTGATTGGCCG...

CDS

Download CDS FASTA

5193 bp · LXL04_006904|LXL04_006904|OH1004|CDS

ATGCTTCATCTTCCAATTTCACAGAAACGAAAGTTGACTGGAATTGTCAATGGACATCCGCTGCACAATAGCGACGAAACACAAGAACGAGTCAACAAACGAAATTCATCCATTCACTGTCGGAAGTCTGAAGCTATCAACGACACCGATTCATCTTCCTCTTCCTCCTCTGTACTACCAGACCAGACATGTCGACGTTTTACCTTTCCTGAAATTCAATCGGCAACCAATAATTTCGATGAGAATTTAGTGATTGGCCG...

Protein

Download Protein FASTA

1730 aa · LXL04_006904|LXL04_006904|OH1004|PROTEIN

MLHLPISQKRKLTGIVNGHPLHNSDETQERVNKRNSSIHCRKSEAINDTDSSSSSSSVLPDQTCRRFTFPEIQSATNNFDENLVIGRGGFGNVYKCSTIGSAREVAVKRLHSMSNQGAHEFEAEVEVLSKLRHGNLVSLLGYCNEEKEMALIYEFMPNGTLEENLHRPELSLSWLQLLKISIGAARGLDYLHTGTSTQHGVIHRDVKSSNILLDANFDAKIADFGLARIGLIERTHVSTAVKGTFGYMDPSYFYTGKLTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006904`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006904

Location Chr02:29277900-29293461 (-)

Description Similar to CRK: CDPK-related protein kinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50530`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At2g41140`	May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity).	The calmodulin-binding protein kinase 3 is part of heat-shock signal transduction in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03544.x
`At3g19100`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At1g49580`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006904 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010286 heat acclimation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009931 calcium-dependent protein serine/threonine kinase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G41140

ath:AT3G50530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604

Rank 1 · LXL04_006904 · OH-1004

Nucleus0.211

Rank 2 · LXL04_006904 · OH-1004

Cell membrane0.201

Rank 3 · LXL04_006904 · OH-1004

Lysosome / Vacuole0.068

Rank 4 · LXL04_006904 · OH-1004

Endoplasmic reticulum0.061

Rank 5 · LXL04_006904 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase83-344 aa

PF07714.24PK_Tyr_Ser-Thr84-347 aa

PF00069.32Pkinase432-694 aa

PF07714.24PK_Tyr_Ser-Thr433-685 aa

PF00069.32Pkinase922-1186 aa

PF07714.24PK_Tyr_Ser-Thr923-1188 aa

PF00069.32Pkinase1271-1533 aa

PF07714.24PK_Tyr_Ser-Thr1272-1526 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006904	`PF00069.32`	Pkinase	83	344	1.5e-234	775.9
LXL04_006904	`PF07714.24`	PK_Tyr_Ser-Thr	84	347	2.9e-172	571.5
LXL04_006904	`PF00069.32`	Pkinase	432	694	1.5e-234	775.9
LXL04_006904	`PF07714.24`	PK_Tyr_Ser-Thr	433	685	2.9e-172	571.5
LXL04_006904	`PF00069.32`	Pkinase	922	1186	1.5e-234	775.9
LXL04_006904	`PF07714.24`	PK_Tyr_Ser-Thr	923	1188	2.9e-172	571.5
LXL04_006904	`PF00069.32`	Pkinase	1271	1533	1.5e-234	775.9
LXL04_006904	`PF07714.24`	PK_Tyr_Ser-Thr	1272	1526	2.9e-172	571.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCS2`	Arabidopsis thaliana	CDPK-related kinase 5	74.160%	Swiss-Prot	weak database homology
`O80673`	Arabidopsis thaliana	CDPK-related kinase 1	71.092%	Swiss-Prot	weak database homology
`Q9LJL9`	Arabidopsis thaliana	CDPK-related kinase 2	71.613%	Swiss-Prot	weak database homology
`Q9FX86`	Arabidopsis thaliana	CDPK-related kinase 8	71.398%	Swiss-Prot	weak database homology

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