LXL04_006883 | RubberDandelionOmics

Gene overview

LXL04_006883

Reference: OH-1004 Chr: Chr02 Coordinates: 28650572-28654631 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1977 bp · LXL04_006883|LXL04_006883|OH1004|cDNA

ATGGAGACCGACAATCGAGCCCAAAGAACCATACGAAATCATCAATTCCTTACCGCAGGTAGCTCTATTTTAAATGTAATAGATATTCTTAGGAATCAAAGAAACTACCCAATCATGTTACCTGCACCTATCAAGGATATaaattcctcttcctcttccGTACTGCCAGACCAGAAATGTCAACGTTTTACTTATGCTGAGATTCAATCTGCAACCAACAACTTCGACGAGACTTTAGTAATCGGCCATGGAGGATTCGG...

CDS

Download CDS FASTA

1977 bp · LXL04_006883|LXL04_006883|OH1004|CDS

ATGGAGACCGACAATCGAGCCCAAAGAACCATACGAAATCATCAATTCCTTACCGCAGGTAGCTCTATTTTAAATGTAATAGATATTCTTAGGAATCAAAGAAACTACCCAATCATGTTACCTGCACCTATCAAGGATATAAATTCCTCTTCCTCTTCCGTACTGCCAGACCAGAAATGTCAACGTTTTACTTATGCTGAGATTCAATCTGCAACCAACAACTTCGACGAGACTTTAGTAATCGGCCATGGAGGATTCGG...

Protein

Download Protein FASTA

658 aa · LXL04_006883|LXL04_006883|OH1004|PROTEIN

METDNRAQRTIRNHQFLTAGSSILNVIDILRNQRNYPIMLPAPIKDINSSSSSVLPDQKCQRFTYAEIQSATNNFDETLVIGHGGFGKVYKCPIKIGPVNEVAIKRLHSMSNQGTHEFEAEVEVLSKLRHGNLVSLLGYCNEEKEMVLVYEFMPNGTLEENLLKPELSLSWLQLLKISIGAARGLDYLHSGTSTQHGVIHRDVKSSNILLDANFDAKISDFGLAKVGFRDRTRVSTAVKGTFGYMDPSYFYTGKLTTSSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006883`
TK1151 ID	TkA03G085630
OH-1004 ID	LXL04_006883
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.500
Protein coverage (%)	TK1151 98.529 / OH-1004 50.912 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006883

Location Chr02:28650572-28654631 (+)

Description Similar to FER: Receptor-like protein kinase FERONIA

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At1g30570`	Probable receptor-like protein kinase At1g30570.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006883 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT1G30570

ath:AT3G46290

ath:AT3G51550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.575

Rank 1 · LXL04_006883 · OH-1004

Cytoplasm0.308

Rank 2 · LXL04_006883 · OH-1004

Nucleus0.223

Rank 3 · LXL04_006883 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_006883 · OH-1004

Golgi apparatus0.039

Rank 5 · LXL04_006883 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr80-347 aa

PF00069.32Pkinase80-344 aa

PF07714.24PK_Tyr_Ser-Thr456-654 aa

PF00069.32Pkinase457-632 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006883	`PF07714.24`	PK_Tyr_Ser-Thr	80	347	1.3e-66	225.3
LXL04_006883	`PF00069.32`	Pkinase	80	344	1.2e-57	196.0
LXL04_006883	`PF07714.24`	PK_Tyr_Ser-Thr	456	654	1.3e-66	225.3
LXL04_006883	`PF00069.32`	Pkinase	457	632	1.2e-57	196.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	52.366%	Swiss-Prot	weak database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	51.961%	Swiss-Prot	weak database homology
`Q9SA72`	Arabidopsis thaliana	Probable receptor-like protein kinase At1g30570	52.218%	Swiss-Prot	weak database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	50.804%	Swiss-Prot	weak database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	48.428%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card