LXL04_006806 | RubberDandelionOmics

Gene overview

LXL04_006806

Reference: OH-1004 Chr: Chr02 Coordinates: 25931242-25934750 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_006806|LXL04_006806|OH1004|cDNA

ATGGCTGATATTCTTCAGGATGCATTGATGAACGGTGTTGAAAGGATTGATTTATCTCATCGCCGCTTGCCCTTCGTCCCTGAAGCCTTCGGCAAGCTTCGTACATTGGTTTCCCTTAACCTATCATCCAATAAACTTACGGCTATTCCAGATTCAGTTGCAGGACTCGTGAATCTCGAGGCGCTTGATGTTTCTGCTGATCAATTTGAATCACTACCAAATGCCATCGGCAAGCTGAAGAAGTTGCAGATCCTAAATGT...

CDS

Download CDS FASTA

1584 bp · LXL04_006806|LXL04_006806|OH1004|CDS

ATGGCTGATATTCTTCAGGATGCATTGATGAACGGTGTTGAAAGGATTGATTTATCTCATCGCCGCTTGCCCTTCGTCCCTGAAGCCTTCGGCAAGCTTCGTACATTGGTTTCCCTTAACCTATCATCCAATAAACTTACGGCTATTCCAGATTCAGTTGCAGGACTCGTGAATCTCGAGGCGCTTGATGTTTCTGCTGATCAATTTGAATCACTACCAAATGCCATCGGCAAGCTGAAGAAGTTGCAGATCCTAAATGT...

Protein

Download Protein FASTA

527 aa · LXL04_006806|LXL04_006806|OH1004|PROTEIN

MADILQDALMNGVERIDLSHRRLPFVPEAFGKLRTLVSLNLSSNKLTAIPDSVAGLVNLEALDVSADQFESLPNAIGKLKKLQILNVSRNKLTSLPDGLLQLMKKSLLLVDANEYLLLLLLFVSATFFLTSFACSNGGCQILESCSAATDCAQGLYCGNCAQSGKPQPFCIRGQANVPTSIIDGLPFNKYTWLVTHNAFSMVDAPLLTGPQRITFYNQEDSVTNQLRNGVRGLMLDMYDFENDIWLCHSFHGQCFNITAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006806`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006806

Location Chr02:25931242-25934750 (+)

Description Similar to At5g67130: PI-PLC X domain-containing protein At5g67130

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67130`	PI-PLC X domain-containing protein At5g67130.	No verified direct reference in this release
`At3g11330`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen.2010 · DOI: 10.1007/s00425-010-1242-6 Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype.2011 · DOI: 10.1007/s00425-010-1324-5
`At5g05850`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen.2010 · DOI: 10.1007/s00425-010-1242-6 Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype.2011 · DOI: 10.1007/s00425-010-1324-5
`At3g26500`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	No verified direct reference in this release
`At1g12970`	Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006806 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0009555 pollen development Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0055046 microgametogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0008081 phosphoric diester hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT3G11330

ath:AT5G05850

ath:AT5G67130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.328

Rank 1 · LXL04_006806 · OH-1004

Cell membrane0.301

Rank 2 · LXL04_006806 · OH-1004

Lysosome / Vacuole0.168

Rank 3 · LXL04_006806 · OH-1004

Cytoplasm0.138

Rank 4 · LXL04_006806 · OH-1004

Endoplasmic reticulum0.097

Rank 5 · LXL04_006806 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_814-68 aa

PF12799.14LRR_435-73 aa

PF23598.2LRR_1456-113 aa

PF26146.1PI-PLC_X215-436 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006806	`PF13855.13`	LRR_8	14	68	1.1e-12	48.2
LXL04_006806	`PF12799.14`	LRR_4	35	73	6.8e-08	33.2
LXL04_006806	`PF23598.2`	LRR_14	56	113	1.2e-09	38.2
LXL04_006806	`PF26146.1`	PI-PLC_X	215	436	9.5e-18	65.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93XX5`	Arabidopsis thaliana	PI-PLC X domain-containing protein At5g67130	74.857%	Swiss-Prot	moderate database homology
`Q8VYG9`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 9	60.417%	Swiss-Prot	weak database homology
`Q9FFJ3`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 1	59.375%	Swiss-Prot	weak database homology
`Q9LRV8`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 2	50.909%	Swiss-Prot	weak database homology
`Q8W4Q3`	Arabidopsis thaliana	Plant intracellular Ras-group-related LRR protein 3	47.748%	Swiss-Prot	weak database homology

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