LXL04_006777 | RubberDandelionOmics

Gene overview

LXL04_006777

Reference: OH-1004 Chr: Chr02 Coordinates: 25064344-25065273 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · LXL04_006777|LXL04_006777|OH1004|cDNA

ATGCACAGTTCTCGATCCATTCAAAAACTCCTAATACGACACCGAACATATCACGAGAATGAAGAAGGTGAATTCGAAGGCTTCTACACATTACATTCCCAAGACCAATTGCCATTGTGTCCAACACGTGGATACATTGGTATACCACAATTAGAGTTTCCCTTCACATATTCCACGATTGTTGGTTCTTGTGATGGAATCATCTGTCTGTTTGATTATAACGACAATCATATTAGTCTATGGAACCCTTCAATCAGGCG...

CDS

Download CDS FASTA

930 bp · LXL04_006777|LXL04_006777|OH1004|CDS

ATGCACAGTTCTCGATCCATTCAAAAACTCCTAATACGACACCGAACATATCACGAGAATGAAGAAGGTGAATTCGAAGGCTTCTACACATTACATTCCCAAGACCAATTGCCATTGTGTCCAACACGTGGATACATTGGTATACCACAATTAGAGTTTCCCTTCACATATTCCACGATTGTTGGTTCTTGTGATGGAATCATCTGTCTGTTTGATTATAACGACAATCATATTAGTCTATGGAACCCTTCAATCAGGCG...

Protein

Download Protein FASTA

309 aa · LXL04_006777|LXL04_006777|OH1004|PROTEIN

MHSSRSIQKLLIRHRTYHENEEGEFEGFYTLHSQDQLPLCPTRGYIGIPQLEFPFTYSTIVGSCDGIICLFDYNDNHISLWNPSIRRTLILPDCPRRCYSASEIGFGYDPITDDHKVVSVPGVIGEHVELAYVYSIKKNAWCAVSSPMPVYRRVSLKSRACFVSGALHWLVQLYGAREFFIMKFDLSKHVFSRVPSPEPRWTKGPTAVHGCLAVVTEQSLTENWIWVRRGDSWCVVFKLKEAEEADDLGGALQLGTDGVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006777`
TK1151 ID	TkA03G070620
OH-1004 ID	LXL04_006777
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.600
Protein coverage (%)	TK1151 89.615 / OH-1004 76.375 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006777

Location Chr02:25064344-25065273 (+)

Description Similar to At3g16210: Putative F-box protein At3g16210

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16210`	Putative F-box protein At3g16210.	No verified direct reference in this release
`At3g06240`	F-box/kelch-repeat protein At3g06240.	No verified direct reference in this release
`At1g47790`	Putative F-box protein At1g47790.	No verified direct reference in this release
`At3g23880`	F-box/kelch-repeat protein At3g23880.	No verified direct reference in this release
`At1g12190`	Putative F-box protein At1g12190.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006777 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G12190

ath:AT1G47790

ath:AT3G06240

ath:AT3G16210

ath:AT3G23880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.629

Rank 1 · LXL04_006777 · OH-1004

Nucleus0.436

Rank 2 · LXL04_006777 · OH-1004

Cell membrane0.106

Rank 3 · LXL04_006777 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_006777 · OH-1004

Lysosome / Vacuole0.038

Rank 5 · LXL04_006777 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08268.18FBA_354-227 aa

PF07734.19FBA_161-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006777	`PF08268.18`	FBA_3	54	227	2.1e-16	60.6
LXL04_006777	`PF07734.19`	FBA_1	61	218	3.1e-14	53.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LU24`	Arabidopsis thaliana	Putative F-box protein At3g16210	27.895%	Swiss-Prot	weak database homology
`Q8GXC7`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g06240	28.276%	Swiss-Prot	weak database homology
`Q9FZF8`	Arabidopsis thaliana	Putative F-box protein At1g47790	26.923%	Swiss-Prot	weak database homology
`Q9LIR8`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g23880	25.214%	Swiss-Prot	weak database homology
`Q9FWW8`	Arabidopsis thaliana	Putative F-box protein At1g12190	24.088%	Swiss-Prot	weak database homology

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