LXL04_006365 | RubberDandelionOmics

Gene overview

LXL04_006365

Reference: OH-1004 Chr: Chr02 Coordinates: 8953533-8959236 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3015 bp · LXL04_006365|LXL04_006365|OH1004|cDNA

ATggccggaccaccgccggagACACTGTCGGAATCACCGTTAGAACCAAACGCCATCACCGGAACCGCTGGAACGAAGCATGACAGATTGCCAATTTCGCGATCTATTTTTCTGATCTCGGAAAGTAACTCTCCCGTATCTGCTCTTCCTGAACAAACTTACTTCGCCTCTCCACTTCGTAATCATCTTCGCTCATCCTCTTccaaaaaaacaattaaaaaaatgAGTGAATCGTTTTCTCCTGATCTCGTTCCACTGGA...

CDS

Download CDS FASTA

3015 bp · LXL04_006365|LXL04_006365|OH1004|CDS

ATGGCCGGACCACCGCCGGAGACACTGTCGGAATCACCGTTAGAACCAAACGCCATCACCGGAACCGCTGGAACGAAGCATGACAGATTGCCAATTTCGCGATCTATTTTTCTGATCTCGGAAAGTAACTCTCCCGTATCTGCTCTTCCTGAACAAACTTACTTCGCCTCTCCACTTCGTAATCATCTTCGCTCATCCTCTTCCAAAAAAACAATTAAAAAAATGAGTGAATCGTTTTCTCCTGATCTCGTTCCACTGGA...

Protein

Download Protein FASTA

1004 aa · LXL04_006365|LXL04_006365|OH1004|PROTEIN

MAGPPPETLSESPLEPNAITGTAGTKHDRLPISRSIFLISESNSPVSALPEQTYFASPLRNHLRSSSSKKTIKKMSESFSPDLVPLDSMDREFLLLAPKLVKANYRLGSSAVKAKPALMHLSLWKPISHCAAMILDKKGRKKNGSDHNSSDENKKNPLVLRRLQEHKLREALEEASEDGSLVKSQDIDSESAANKNQDDGLGRSRSLARLETQKEFLRATALAANRTFETEDSIPDLHQSFNKFLTMYPKYQSSEKIDHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006365`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006365

Location Chr02:8953533-8959236 (+)

Description Similar to ABA3: Molybdenum cofactor sulfurase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16540`	Sulfurates the molybdenum cofactor.	The Arabidopsis LOS5/ABA3 locus encodes a molybdenum cofactor sulfurase and modulates cold stress- and osmotic stress-responsive gene expression.2001 · DOI: 10.1105/tpc.010101 ABA3 is a molybdenum cofactor sulfurase required for activation of aldehyde oxidase and xanthine dehydrogenase in Arabidopsis thaliana.2001 · DOI: 10.1074/jbc.c100472200 Tandem orientation of duplicated xanthine dehydrogenase genes from Arabidopsis thaliana: differential gene expression and enzyme activities.2004 · DOI: 10.1074/jbc.m312929200 Characterization of the NifS-like domain of ABA3 from Arabidopsis thaliana provides insight into the mechanism of molybdenum cofactor sulfuration.2005 · DOI: 10.1074/jbc.m411195200 Binding of sulfurated molybdenum cofactor to the C-terminal domain of ABA3 from Arabidopsis thaliana provides insight into the mechanism of molybdenum cofactor sulfuration.2008 · DOI: 10.1074/jbc.m708549200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006365 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006777 Mo-molybdopterin cofactor biosynthetic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009688 abscisic acid biosynthetic process Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009749 response to glucose Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0018315 molybdenum incorporation into molybdenum-molybdopterin complex Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G16540

sly:543832

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.450

Rank 1 · LXL04_006365 · OH-1004

Cytoplasm0.294

Rank 2 · LXL04_006365 · OH-1004

Cell membrane0.186

Rank 3 · LXL04_006365 · OH-1004

Endoplasmic reticulum0.105

Rank 4 · LXL04_006365 · OH-1004

Golgi apparatus0.074

Rank 5 · LXL04_006365 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5X8`	Arabidopsis thaliana	Molybdenum cofactor sulfurase	24.917%	Swiss-Prot	weak database homology

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