Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1272 bp · LXL04_006346|LXL04_006346|OH1004|cDNA
ATGCCCACTTGTACCTTATGGAACATGATCAAGCAGAAGGATATAACCATTGTATTTGAAAGAGAAGAAAAGGAAACAATCGTTCCTAGCCGTTTTTTGGTGGAGTTCCATGGAGCTATCTCTTACTACGTGTCGGGTATGACTACTGGGGTCAAGAAAGATGACATTAGAAAATGCTTCGAAAGATACGGAGATCTGGTGGACGTCTTCATCGGCAAAAAGAAAGATGCAGCAGGGAAGAACTTTGCATTTGTTAAGTT...
1272 bp · LXL04_006346|LXL04_006346|OH1004|CDS
ATGCCCACTTGTACCTTATGGAACATGATCAAGCAGAAGGATATAACCATTGTATTTGAAAGAGAAGAAAAGGAAACAATCGTTCCTAGCCGTTTTTTGGTGGAGTTCCATGGAGCTATCTCTTACTACGTGTCGGGTATGACTACTGGGGTCAAGAAAGATGACATTAGAAAATGCTTCGAAAGATACGGAGATCTGGTGGACGTCTTCATCGGCAAAAAGAAAGATGCAGCAGGGAAGAACTTTGCATTTGTTAAGTT...
Protein
Download Protein FASTA423 aa · LXL04_006346|LXL04_006346|OH1004|PROTEIN
MPTCTLWNMIKQKDITIVFEREEKETIVPSRFLVEFHGAISYYVSGMTTGVKKDDIRKCFERYGDLVDVFIGKKKDAAGKNFAFVKFHNVGDIWKLESDMQSVICAGKPVYVNVARYGRNKAPIFEPKDTTRKSHGPISHRQNSHRQPLKPPQPSCYDVSIARRSYADVTSGSLPTPITPNPCNSSINWLTDKVLVGEALSIDHLASLHAGLGSDVTLESIKYLGGLKVRLTFKDLSNASNFMADTSRWIEWLHWVVPGN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006346 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006346 |
|---|---|
| Location | Chr02:8360756-8364549 (+) |
| Description | Similar to SRSF8: Serine/arginine-rich splicing factor 8 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0033197 response to vitamin E Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005726 perichromatin fibrils Cellular Component GO:0005829 cytosol Cellular Component GO:0016607 nuclear speck Cellular Component GO:0035061 interchromatin granule Cellular Component GO:0003723 RNA binding Molecular Function |
| KEGG gene cross-reference | gga:396195 hsa:10929 mmu:20382 ptr:619467 rno:494445 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_143-92 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006346 | PF00076.29 | RRM_1 | 43 | 92 | 4e-08 | 33.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.