LXL04_006277 | RubberDandelionOmics

Gene overview

LXL04_006277

Reference: OH-1004 Chr: Chr02 Coordinates: 5963748-5964879 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

453 bp · LXL04_006277|LXL04_006277|OH1004|cDNA

ATGGAACCCTTATCTTCTTACTATGGTCGTGTTCATGAGCGGAATCAATGTTTTAGAATAATGTGGCTTATGCAATACATAACATCAAAGATGAAAGTAGCTCTCTTATCTATGTTGGCTATGCTAGCCATGGTTCAATTCATGGTCCACCCAAGTGAAGCCCTTACTTGTACCGATGTTGACATCCTCCTTGGACCATGCTTGACCTTCCTAAGGTTTGGTGGAGTGCTACCAGGAGATTGTTGCACCGGGTTAAAGAA...

CDS

Download CDS FASTA

453 bp · LXL04_006277|LXL04_006277|OH1004|CDS

ATGGAACCCTTATCTTCTTACTATGGTCGTGTTCATGAGCGGAATCAATGTTTTAGAATAATGTGGCTTATGCAATACATAACATCAAAGATGAAAGTAGCTCTCTTATCTATGTTGGCTATGCTAGCCATGGTTCAATTCATGGTCCACCCAAGTGAAGCCCTTACTTGTACCGATGTTGACATCCTCCTTGGACCATGCTTGACCTTCCTAAGGTTTGGTGGAGTGCTACCAGGAGATTGTTGCACCGGGTTAAAGAA...

Protein

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150 aa · LXL04_006277|LXL04_006277|OH1004|PROTEIN

MEPLSSYYGRVHERNQCFRIMWLMQYITSKMKVALLSMLAMLAMVQFMVHPSEALTCTDVDILLGPCLTFLRFGGVLPGDCCTGLKKLEAAATTKIDRQTACNCCKSAARTFQIRPDYASQLPTKCGVSVGIQIDPNVDCSTVSLYQSYK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006277`
TK1151 ID	TkA03G024830
OH-1004 ID	LXL04_006277
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 80.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006277

Location Chr02:5963748-5964879 (-)

Description Similar to Non-specific lipid-transfer protein AP10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33355`	Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006277 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006869 lipid transport Biological Process

GO:0031640 killing of cells of another organism Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0016020 membrane Cellular Component

GO:0008289 lipid binding Molecular Function

GO:0019863 IgE binding Molecular Function

KEGG gene cross-reference

ath:AT4G33355

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.444

Rank 1 · LXL04_006277 · OH-1004

Lysosome / Vacuole0.193

Rank 2 · LXL04_006277 · OH-1004

Endoplasmic reticulum0.165

Rank 3 · LXL04_006277 · OH-1004

Cytoplasm0.156

Rank 4 · LXL04_006277 · OH-1004

Cell membrane0.090

Rank 5 · LXL04_006277 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00234.28Tryp_alpha_amyl57-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006277	`PF00234.28`	Tryp_alpha_amyl	57	132	6.6e-11	43.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q2V3C1`	Arabidopsis thaliana	Non-specific lipid-transfer protein 11	40.984%	Swiss-Prot	moderate database homology

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