LXL04_006273 | RubberDandelionOmics

Gene overview

LXL04_006273

Reference: OH-1004 Chr: Chr02 Coordinates: 5857892-5859616 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

904 bp · LXL04_006273|LXL04_006273|OH1004|cDNA

ATGTTTTTGCTGTTTGTATAGTGTTCTGTTTTTCCACCCACCATAAGAACAGCCTTTCACACCaatacacacacacatacacacacttTGCCAAAAATCCTATCCACTATTTCTACAATCTcttaaaaacaacaaaattccCTATTTAATTTCCATGTCCTTCCTTCCACCTGAACCCATGTTCTTCGGCTATGAAGATCACTTCCAAGGTCCCCATGAGCCACTGATGAGAAGATCGATGTCATATTCCGGGAGAGAAT...

CDS

Download CDS FASTA

750 bp · LXL04_006273|LXL04_006273|OH1004|CDS

ATGTCCTTCCTTCCACCTGAACCCATGTTCTTCGGCTATGAAGATCACTTCCAAGGTCCCCATGAGCCACTGATGAGAAGATCGATGTCATATTCCGGGAGAGAATTATGCGATCAAGAAGTAATGACAAATGGCTGCGATGGTGAGACATCGGAAGACGAGGGGTCTCAACTCGGAGAAAAGAAAAGAAGGCTGAACCTTGAACAAGTCAAGGCTTTGGAGAAAAGCTTTGAGATTGGAAACAAACTTGAACCGGATAG...

Protein

Download Protein FASTA

249 aa · LXL04_006273|LXL04_006273|OH1004|PROTEIN

MSFLPPEPMFFGYEDHFQGPHEPLMRRSMSYSGRELCDQEVMTNGCDGETSEDEGSQLGEKKRRLNLEQVKALEKSFEIGNKLEPDRKRQLARALGLQPRQVAIWFQNRRARWKTKQLERDYNVLKKQVDSIKADNDSLKNKNQKLHAQLMAIKGQEPNGLNLKRETEGSWSNGSESEDNTNLFYTQISNNLPTGAAMIGGLATPYLFRQPLNHTVVAGDEGFCNMLNVMEEQPAFWPWPEAEPPHHQL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006273`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006273

Location Chr02:5857892-5859616 (+)

Description Similar to HAT7: Homeobox-leucine zipper protein HAT7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15150`	Probable transcription factor.	No verified direct reference in this release
`At1g69780`	Probable transcription factor that may act in the sucrose-signaling pathway.	No verified direct reference in this release
`At3g01220`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0170600`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2XD08`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006273 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048826 cotyledon morphogenesis Biological Process

GO:0080022 primary root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G69780

ath:AT3G01220

ath:AT5G15150

dosa:Os03g0170600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980

Rank 1 · LXL04_006273 · OH-1004

Cytoplasm0.082

Rank 2 · LXL04_006273 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_006273 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_006273 · OH-1004

Plastid0.010

Rank 5 · LXL04_006273 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00046.36Homeodomain61-114 aa

PF02183.24HALZ116-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006273	`PF00046.36`	Homeodomain	61	114	2.3e-16	60.1
LXL04_006273	`PF02183.24`	HALZ	116	156	4e-15	56.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q00466`	Arabidopsis thaliana	Homeobox-leucine zipper protein HAT7	46.442%	Swiss-Prot	moderate database homology
`Q8LC03`	Arabidopsis thaliana	Homeobox-leucine zipper protein ATHB-13	47.391%	Swiss-Prot	moderate database homology
`Q8LAT0`	Arabidopsis thaliana	Homeobox-leucine zipper protein ATHB-20	48.945%	Swiss-Prot	moderate database homology
`Q8S7W9`	Oryza sativa subsp. japonica	Homeobox-leucine zipper protein HOX21	44.928%	Swiss-Prot	moderate database homology
`A2XD08`	Oryza sativa subsp. indica	Homeobox-leucine zipper protein HOX21	44.928%	Swiss-Prot	moderate database homology

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