LXL04_006269 | RubberDandelionOmics

Gene overview

LXL04_006269

Reference: OH-1004 Chr: Chr02 Coordinates: 5663577-5667493 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1404 bp · LXL04_006269|LXL04_006269|OH1004|cDNA

ATGGGGGTGGGTCCTGATTCTATTAAAACTAGGGTTTTGAATGTGGATAAATTGAAGGAAAGCAAGAAGAAAGAAGACGAGGTTCATGATACAGGGTGTTGGATTAAGTTCAGATTCTTTGGAAGATGCATATCTTCAAGGTCTAAAGTTGAAAGCTCCATTAGTGGTAGTAGCACTCAATATGCGGAAAGTAAATCAACAAATGACACGAGTACAGACCACCAACCGATTGCACCATGTGCATCATCATCAACAACAAG...

CDS

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1404 bp · LXL04_006269|LXL04_006269|OH1004|CDS

ATGGGGGTGGGTCCTGATTCTATTAAAACTAGGGTTTTGAATGTGGATAAATTGAAGGAAAGCAAGAAGAAAGAAGACGAGGTTCATGATACAGGGTGTTGGATTAAGTTCAGATTCTTTGGAAGATGCATATCTTCAAGGTCTAAAGTTGAAAGCTCCATTAGTGGTAGTAGCACTCAATATGCGGAAAGTAAATCAACAAATGACACGAGTACAGACCACCAACCGATTGCACCATGTGCATCATCATCAACAACAAG...

Protein

Download Protein FASTA

467 aa · LXL04_006269|LXL04_006269|OH1004|PROTEIN

MGVGPDSIKTRVLNVDKLKESKKKEDEVHDTGCWIKFRFFGRCISSRSKVESSISGSSTQYAESKSTNDTSTDHQPIAPCASSSTTSNEESNTSSTLNITEELNISSQLRKFNFSELKSATRNFRPESLLGEGGFGCVFKGWINETGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLLHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWAMRMKIALGAAKGLAFLHEEAERPVIYRDFKT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006269`
TK1151 ID	TkA03G023660
OH-1004 ID	LXL04_006269
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006269

Location Chr02:5663577-5667493 (-)

Description Similar to PIX7: Probable serine/threonine-protein kinase PIX7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15080`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At3g01300`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At3g28690`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At1g07570`	Possible bi-functional kinase.	Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006269 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010078 maintenance of root meristem identity Biological Process

GO:0010088 phloem development Biological Process

GO:0010492 maintenance of shoot apical meristem identity Biological Process

GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process

GO:0045087 innate immune response Biological Process

GO:1901653 cellular response to peptide Biological Process

GO:2000280 regulation of root development Biological Process

KEGG gene cross-reference

ath:AT1G07570

ath:AT3G01300

ath:AT3G28690

ath:AT5G15080

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.714

Rank 1 · LXL04_006269 · OH-1004

Nucleus0.230

Rank 2 · LXL04_006269 · OH-1004

Cytoplasm0.215

Rank 3 · LXL04_006269 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_006269 · OH-1004

Golgi apparatus0.024

Rank 5 · LXL04_006269 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase127-401 aa

PF07714.24PK_Tyr_Ser-Thr128-404 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006269	`PF00069.32`	Pkinase	127	401	1.2e-44	153.4
LXL04_006269	`PF07714.24`	PK_Tyr_Ser-Thr	128	404	8.6e-47	160.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LFP7`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL34	75.724%	Swiss-Prot	strong database homology
`Q9SRH7`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL35	76.167%	Swiss-Prot	strong database homology
`F4J0D2`	Arabidopsis thaliana	Serine/threonine-protein kinase PBL36	67.770%	Swiss-Prot	strong database homology
`Q06548`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL9	60.963%	Swiss-Prot	strong database homology
`Q65XV8`	Oryza sativa subsp. japonica	Receptor-like cytoplasmic kinase 176	61.214%	Swiss-Prot	strong database homology

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