LXL04_006233 | RubberDandelionOmics

Gene overview

LXL04_006233

Reference: OH-1004 Chr: Chr02 Coordinates: 4535954-4537606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1653 bp · LXL04_006233|LXL04_006233|OH1004|cDNA

ATGGATAATGAAACCCAGATCAAGAAAAGAAAGCTTCAAACTGAAACTATGGAAGCTAATGGTGAGATTTTCGTAGTACCATTCTTTGGTCAAGGTCATCTCTTCCCAGCTATGGAGCTCTGCAAAAACATTTCAACTCATCATTACAGTGTCACACTCATCATCCCTTCTCATCTTTCTTCATCTATCCCATCCACGTTTTCTGACAACTCCCCTTTCATTCATGTTACTGAGATCTCCGTCGCCGCTTCGCCTACACC...

CDS

Download CDS FASTA

1653 bp · LXL04_006233|LXL04_006233|OH1004|CDS

ATGGATAATGAAACCCAGATCAAGAAAAGAAAGCTTCAAACTGAAACTATGGAAGCTAATGGTGAGATTTTCGTAGTACCATTCTTTGGTCAAGGTCATCTCTTCCCAGCTATGGAGCTCTGCAAAAACATTTCAACTCATCATTACAGTGTCACACTCATCATCCCTTCTCATCTTTCTTCATCTATCCCATCCACGTTTTCTGACAACTCCCCTTTCATTCATGTTACTGAGATCTCCGTCGCCGCTTCGCCTACACC...

Protein

Download Protein FASTA

550 aa · LXL04_006233|LXL04_006233|OH1004|PROTEIN

MDNETQIKKRKLQTETMEANGEIFVVPFFGQGHLFPAMELCKNISTHHYSVTLIIPSHLSSSIPSTFSDNSPFIHVTEISVAASPTPETADEPGSEKEDRPSGPKGNPLQEQNLQMGKGIKSFLSTRSGVRPTCVVVDNMMSWCKEIFTDLGIPVVSFSTSGATASAMGHGMWKAEVGNMKPGEIREIPGLPKEMFVTFADLSRGPRRRPQRRNWSPGDSANQDGSTGPPHRMRSGPRHGPRGGGGGGSAGPGDKPRWVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006233`
TK1151 ID	TkA03G019360
OH-1004 ID	LXL04_006233
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 97.091 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006233

Location Chr02:4535954-4537606 (+)

Description Similar to UGT73C3: UDP-glycosyltransferase 73C3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36780`	UDP-glycosyltransferase 73C3.	No verified direct reference in this release
`At4g34138`	Possesses low quercetin 3-O-glucosyltransferase and 7-O-glucosyltransferase activities in vitro.	No verified direct reference in this release
`At5g12890`	UDP-glycosyltransferase 92A1.	No verified direct reference in this release
`At2g36800`	Specifically catalyzes 23-O-glucosylation of brassinosteroids, resulting probably in their inactivation.	Detoxification of the Fusarium mycotoxin deoxynivalenol by a UDP-glucosyltransferase from Arabidopsis thaliana.2003 · DOI: 10.1074/jbc.m307552200 N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200 The UGT73C5 of Arabidopsis thaliana glucosylates brassinosteroids.2005 · DOI: 10.1073/pnas.0504279102
`At4g34135`	Catalyzes the glycosylation of flavonoids from UDP-glucose.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006233 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0016131 brassinosteroid metabolic process Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0098754 detoxification Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0033836 flavonol 7-O-beta-glucosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G36780

ath:AT2G36800

ath:AT4G34135

ath:AT4G34138

ath:AT5G12890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.663

Rank 1 · LXL04_006233 · OH-1004

Nucleus0.338

Rank 2 · LXL04_006233 · OH-1004

Endoplasmic reticulum0.095

Rank 3 · LXL04_006233 · OH-1004

Cell membrane0.084

Rank 4 · LXL04_006233 · OH-1004

Plastid0.056

Rank 5 · LXL04_006233 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201.25UDPGT327-479 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006233	`PF00201.25`	UDPGT	327	479	1.3e-20	74.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQ96`	Arabidopsis thaliana	UDP-glycosyltransferase 73C3	27.725%	Swiss-Prot	weak database homology
`Q8VZE9`	Arabidopsis thaliana	UDP-glycosyltransferase 73B1	24.314%	Swiss-Prot	weak database homology
`Q9LXV0`	Arabidopsis thaliana	UDP-glycosyltransferase 92A1	26.888%	Swiss-Prot	weak database homology
`Q9ZQ94`	Arabidopsis thaliana	UDP-glycosyltransferase 73C5	26.792%	Swiss-Prot	weak database homology
`Q94C57`	Arabidopsis thaliana	UDP-glucosyl transferase 73B2	25.490%	Swiss-Prot	weak database homology

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