LXL04_006153 | RubberDandelionOmics

Gene overview

LXL04_006153

Reference: OH-1004 Chr: Chr02 Coordinates: 2602053-2604312 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

708 bp · LXL04_006153|LXL04_006153|OH1004|cDNA

ATGGTGATGAGTAATGAGCAGATACGCACGTATGTTGGAATCGTTGGGAACGTACTCTCTTTCGGCCTGTTTATCTCTCCGATCTTTACGATCGTGAGAATCTTCAAGAACAAATCGGTAGAAGAATTCTTACCAGATCCTTACATAGCATGTGTCATGAACTGTATGCTTTGGATCTTCTATGGTTTACCAATCAATCATCCCGACAGCCTTCTCGTCATCACCATTAACGGAGTAGGTCTAGCATTAGAGCTCTTCTA...

CDS

Download CDS FASTA

708 bp · LXL04_006153|LXL04_006153|OH1004|CDS

ATGGTGATGAGTAATGAGCAGATACGCACGTATGTTGGAATCGTTGGGAACGTACTCTCTTTCGGCCTGTTTATCTCTCCGATCTTTACGATCGTGAGAATCTTCAAGAACAAATCGGTAGAAGAATTCTTACCAGATCCTTACATAGCATGTGTCATGAACTGTATGCTTTGGATCTTCTATGGTTTACCAATCAATCATCCCGACAGCCTTCTCGTCATCACCATTAACGGAGTAGGTCTAGCATTAGAGCTCTTCTA...

Protein

Download Protein FASTA

235 aa · LXL04_006153|LXL04_006153|OH1004|PROTEIN

MVMSNEQIRTYVGIVGNVLSFGLFISPIFTIVRIFKNKSVEEFLPDPYIACVMNCMLWIFYGLPINHPDSLLVITINGVGLALELFYLSSFVIYGKQHRKKIFGWLAIEIIGIGAIAGFDLGYFHTHEKRSFFVGVFCVVFGVLMYSSPLTIMRKVIKTKSVEYMPFFLSLTAFLNGCCWTAYALLKLDWFILIANGLGAVSGFVQLVLYACYYRTTPKRSKTPPSQGQVQLESV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006153`
TK1151 ID	TkA03G012310
OH-1004 ID	LXL04_006153
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006153

Location Chr02:2602053-2604312 (-)

Description Similar to SWEET7B: Bidirectional sugar transporter SWEET7b

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0258700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2YZ24`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os01g0606000`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`UniProt: A2WSD8`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release
`Os01g0605700`	Mediates both low-affinity uptake and efflux of sugar across the plasma membrane.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006153 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008643 carbohydrate transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

dosa:Os01g0605700

dosa:Os01g0606000

dosa:Os09g0258700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.761

Rank 1 · LXL04_006153 · OH-1004

Cytoplasm0.104

Rank 2 · LXL04_006153 · OH-1004

Endoplasmic reticulum0.091

Rank 3 · LXL04_006153 · OH-1004

Lysosome / Vacuole0.071

Rank 4 · LXL04_006153 · OH-1004

Golgi apparatus0.052

Rank 5 · LXL04_006153 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03083.22MtN3_slv11-98 aa

PF03083.22MtN3_slv133-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006153	`PF03083.22`	MtN3_slv	11	98	4.6e-47	158.7
LXL04_006153	`PF03083.22`	MtN3_slv	133	216	4.6e-47	158.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0J349`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET7b	56.502%	Swiss-Prot	strong database homology
`A2YZ24`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET7b	56.502%	Swiss-Prot	strong database homology
`Q8LR09`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET6a	56.356%	Swiss-Prot	strong database homology
`A2WSD8`	Oryza sativa subsp. indica	Bidirectional sugar transporter SWEET6a	56.356%	Swiss-Prot	strong database homology
`Q8W0K2`	Oryza sativa subsp. japonica	Bidirectional sugar transporter SWEET6b	55.745%	Swiss-Prot	strong database homology

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