LXL04_006070 | RubberDandelionOmics

Gene overview

LXL04_006070

Reference: OH-1004 Chr: Chr02 Coordinates: 1339417-1339936 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

447 bp · LXL04_006070|LXL04_006070|OH1004|cDNA

ATGAAGGTcttgatgatgatgatgatggcaGGGGTATTTATGGAAGAAATTAACGCGCAAGGAAGCAGTACTGGCGGTAGGAGTGGCGGCTCAGCCTGCCTGAACCAACTCCTTCCATGCCTGACCTACCTGAACAACCAAGGGCAAGGGCGGGACCCACCGGATAACTGTTGTGATCCTTTGAAATCAGTGATAAAATCGAATCCAGAGTGTTTGTGTAGTATGATAAGTAATCAAGGTACTAGAAATGCTGAGAATGC...

CDS

Download CDS FASTA

447 bp · LXL04_006070|LXL04_006070|OH1004|CDS

ATGAAGGTCTTGATGATGATGATGATGGCAGGGGTATTTATGGAAGAAATTAACGCGCAAGGAAGCAGTACTGGCGGTAGGAGTGGCGGCTCAGCCTGCCTGAACCAACTCCTTCCATGCCTGACCTACCTGAACAACCAAGGGCAAGGGCGGGACCCACCGGATAACTGTTGTGATCCTTTGAAATCAGTGATAAAATCGAATCCAGAGTGTTTGTGTAGTATGATAAGTAATCAAGGTACTAGAAATGCTGAGAATGC...

Protein

Download Protein FASTA

148 aa · LXL04_006070|LXL04_006070|OH1004|PROTEIN

MKVLMMMMMAGVFMEEINAQGSSTGGRSGGSACLNQLLPCLTYLNNQGQGRDPPDNCCDPLKSVIKSNPECLCSMISNQGTRNAENAGINVTKAQELPARCGQRVNPISCITSTSKTTPGTSDSQSLGNSMVYLLYLYPLILIAALYI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006070`
TK1151 ID	TkA03G008090
OH-1004 ID	LXL04_006070
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006070

Location Chr02:1339417-1339936 (+)

Description Similar to VAS: Lipid transfer-like protein VAS

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13900`	Lipid transfer protein that promotes the number of phloem (pro)cambial and pericycle cells.	No verified direct reference in this release
`At3g22600`	Lipid transfer protein involved in seed and ovule maturation and development, probably by regulating the fatty acids homeostasis during suberin and sporopollenin biosynthesis or deposition.	Involvement of lipid transfer proteins in resistance against a non-host powdery mildew in Arabidopsis thaliana.2019 · DOI: 10.1111/mpp.12740
`At5g09370`	Probable lipid transfer protein.	No verified direct reference in this release
`At1g18280`	Lipid transfer protein involved in seed and ovule maturation and development, probably by regulating the fatty acids homeostasis during suberin and sporopollenin biosynthesis or deposition.	No verified direct reference in this release
`At2g48130`	Probable lipid transfer protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006070 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002240 response to molecule of oomycetes origin Biological Process

GO:0006508 proteolysis Biological Process

GO:0006869 lipid transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0009845 seed germination Biological Process

GO:0010214 seed coat development Biological Process

GO:0015908 fatty acid transport Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G18280

ath:AT2G48130

ath:AT3G22600

ath:AT5G09370

ath:AT5G13900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.768

Rank 1 · LXL04_006070 · OH-1004

Cytoplasm0.088

Rank 2 · LXL04_006070 · OH-1004

Endoplasmic reticulum0.077

Rank 3 · LXL04_006070 · OH-1004

Extracellular0.069

Rank 4 · LXL04_006070 · OH-1004

Lysosome / Vacuole0.044

Rank 5 · LXL04_006070 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14368.12LTP_223-110 aa

PF00234.28Tryp_alpha_amyl34-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006070	`PF14368.12`	LTP_2	23	110	3.7e-17	63.0
LXL04_006070	`PF00234.28`	Tryp_alpha_amyl	34	110	1.9e-09	38.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFY3`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 30	44.138%	Swiss-Prot	moderate database homology
`Q9LJ86`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 5	34.959%	Swiss-Prot	moderate database homology
`Q9FY78`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 29	31.868%	Swiss-Prot	moderate database homology
`Q9LE56`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 3	28.788%	Swiss-Prot	weak database homology
`Q7EB72`	Arabidopsis thaliana	Non-specific lipid transfer protein GPI-anchored 15	33.654%	Swiss-Prot	moderate database homology

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