LXL04_006057 | RubberDandelionOmics

Gene overview

LXL04_006057

Reference: OH-1004 Chr: Chr02 Coordinates: 1182126-1183829 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

612 bp · LXL04_006057|LXL04_006057|OH1004|cDNA

ATGTCGGTTCCAGCTCAGTCTTTCAGTGGCAACCTCAAGAAAGCAGTTGCTGGTATAAGACGTATCAAATTGGAAGGATTAAGATGGAGAGTCTTTGATGCCAAAGGCCAGGTGTTAGGGAGATTAGCATCACAGATATCAACAGTGGTTCAAGGAAAAGATAAACCTACATATGCACCTAACCGTGATGATGGTGACATGTGTATTGTTCTTAATGCTAAAGAAATATGTGTCACTGGGAGAAAACTTACTGACAAGTT...

CDS

Download CDS FASTA

612 bp · LXL04_006057|LXL04_006057|OH1004|CDS

ATGTCGGTTCCAGCTCAGTCTTTCAGTGGCAACCTCAAGAAAGCAGTTGCTGGTATAAGACGTATCAAATTGGAAGGATTAAGATGGAGAGTCTTTGATGCCAAAGGCCAGGTGTTAGGGAGATTAGCATCACAGATATCAACAGTGGTTCAAGGAAAAGATAAACCTACATATGCACCTAACCGTGATGATGGTGACATGTGTATTGTTCTTAATGCTAAAGAAATATGTGTCACTGGGAGAAAACTTACTGACAAGTT...

Protein

Download Protein FASTA

203 aa · LXL04_006057|LXL04_006057|OH1004|PROTEIN

MSVPAQSFSGNLKKAVAGIRRIKLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKEICVTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDLKLRIFPGSEHPFGDKALDPYVMPPRQVREMRPRARRAMIRAQKKTQQQQEGGVKVSKGKKRDEKAQLQI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006057`
TK1151 ID	TkA03G007420
OH-1004 ID	LXL04_006057
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_006057`
Location	Chr02:1182126-1183829 (+)
Description	Similar to rplM: 50S ribosomal protein L13 (Chloroflexus aggregans (strain MD-66 / DSM 9485)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006057` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006412 translation Biological Process GO:0017148 negative regulation of translation Biological Process GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0003729 mRNA binding Molecular Function GO:0003735 structural constituent of ribosome Molecular Function
KEGG gene cross-reference	cag:Cagg_2994 cdf:CD630_01040 gau:GAU_1778 pdc:CDIF630_00174 tex:Teth514_0901 tpd:Teth39_0408 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.848

Rank 1 · LXL04_006057 · OH-1004

Cytoplasm0.079

Rank 2 · LXL04_006057 · OH-1004

Nucleus0.046

Rank 3 · LXL04_006057 · OH-1004

Plastid0.026

Rank 4 · LXL04_006057 · OH-1004

Cell membrane0.007

Rank 5 · LXL04_006057 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00572.25Ribosomal_L1328-145 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006057	`PF00572.25`	Ribosomal_L13	28	145	9.2e-44	149.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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