LXL04_005882 | RubberDandelionOmics

Gene overview

LXL04_005882

Reference: OH-1004 Chr: Chr01 Coordinates: 175031855-175035193 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1998 bp · LXL04_005882|LXL04_005882|OH1004|cDNA

ATGAAACAATTGTTTCAATTTCAACTCCTGTGTGTTACTTTAGGGTTCCTTCTACCGTCTTACGACGCCGTTCAACCGCTTGAAGTTCATGCGTTAAATTCGTTCAAAGAAGCTATTTTTGAAGACCCGTTGTTGGTTTTATCAAGCTGGAATAGCCTTGATTCTGATCCCTGTAACTGGTTCGGTGTTACATGTTCTGGAAATCAAGTTTTAAAACTTAACATTTCTAGTTCTTCGATAAAGGGATTCATCGCTGAAGA...

CDS

Download CDS FASTA

1998 bp · LXL04_005882|LXL04_005882|OH1004|CDS

ATGAAACAATTGTTTCAATTTCAACTCCTGTGTGTTACTTTAGGGTTCCTTCTACCGTCTTACGACGCCGTTCAACCGCTTGAAGTTCATGCGTTAAATTCGTTCAAAGAAGCTATTTTTGAAGACCCGTTGTTGGTTTTATCAAGCTGGAATAGCCTTGATTCTGATCCCTGTAACTGGTTCGGTGTTACATGTTCTGGAAATCAAGTTTTAAAACTTAACATTTCTAGTTCTTCGATAAAGGGATTCATCGCTGAAGA...

Protein

Download Protein FASTA

665 aa · LXL04_005882|LXL04_005882|OH1004|PROTEIN

MKQLFQFQLLCVTLGFLLPSYDAVQPLEVHALNSFKEAIFEDPLLVLSSWNSLDSDPCNWFGVTCSGNQVLKLNISSSSIKGFIAEELFQLSALQELYAFFSLRILFHLRITQDSSRNCNSFRILHENKLIGSIPMSIGSLKSLKVLDLGKNQLSGPIPSEIGNLLSIAQINLQSNGLTGKLPSEVFHLQNLQELRLDRNKLQGTIECGSSSLRVADFSYNFLTGTIPKCLEQLPRINFRGNCMNITDTKQRTPKKCGGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005882`
TK1151 ID	TkA01G009800
OH-1004 ID	LXL04_005882
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005882

Location Chr01:175031855-175035193 (-)

Description Similar to At1g63430: Probable LRR receptor-like serine/threonine-protein kinase At1g63430

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63430`	Probable LRR receptor-like serine/threonine-protein kinase At1g63430.	No verified direct reference in this release
`At4g18640`	Involved in the pollen tube perception of the female signal by binding an unidentified female attractant.	Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2005.02609.x
`At5g45840`	Involved in the pollen tube perception of the female signal.	A receptor heteromer mediates the male perception of female attractants in plants.2016 · DOI: 10.1038/nature16975
`At2g40270`	Inactive receptor-like serine/threonine-protein kinase At2g40270.	No verified direct reference in this release
`At3g56050`	Probable inactive receptor-like protein kinase At3g56050.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005882 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0048765 root hair cell differentiation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G63430

ath:AT2G40270

ath:AT3G56050

ath:AT4G18640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.818

Rank 1 · LXL04_005882 · OH-1004

Endoplasmic reticulum0.091

Rank 2 · LXL04_005882 · OH-1004

Cytoplasm0.077

Rank 3 · LXL04_005882 · OH-1004

Nucleus0.060

Rank 4 · LXL04_005882 · OH-1004

Lysosome / Vacuole0.033

Rank 5 · LXL04_005882 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_228-66 aa

PF13855.13LRR_8125-178 aa

PF23598.2LRR_14131-198 aa

PF07714.24PK_Tyr_Ser-Thr366-577 aa

PF00069.32Pkinase367-632 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005882	`PF08263.18`	LRRNT_2	28	66	1.1e-12	48.8
LXL04_005882	`PF13855.13`	LRR_8	125	178	1e-09	38.7
LXL04_005882	`PF23598.2`	LRR_14	131	198	2.5e-06	27.2
LXL04_005882	`PF07714.24`	PK_Tyr_Ser-Thr	366	577	2.6e-16	60.4
LXL04_005882	`PF00069.32`	Pkinase	367	632	8.8e-12	45.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g63430	54.026%	Swiss-Prot	strong database homology
`C0LGQ4`	Arabidopsis thaliana	Protein MALE DISCOVERER 2	31.936%	Swiss-Prot	moderate database homology
`C0LGU7`	Arabidopsis thaliana	Protein MALE DISCOVERER 1	31.167%	Swiss-Prot	moderate database homology
`Q9SIZ4`	Arabidopsis thaliana	Inactive receptor-like serine/threonine-protein kinase At2g40270	33.424%	Swiss-Prot	moderate database homology
`Q9LYN6`	Arabidopsis thaliana	Probable inactive receptor-like protein kinase At3g56050	34.521%	Swiss-Prot	moderate database homology

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