LXL04_005774 | RubberDandelionOmics

Gene overview

LXL04_005774

Reference: OH-1004 Chr: Chr01 Coordinates: 173207890-173208396 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

507 bp · LXL04_005774|LXL04_005774|OH1004|cDNA

ATGGAGGCTTTTCTCGAGAAGTTCCAACATGATCTTAAAGTCTTTAGCTTTGAAGAAATAAAGTCGGTCACCGACGACTTTAATAAGAACAAACTTATCGGAGAAGGTGGATTCGGGAAAGTGTATAGAGGAGTTGTCAACTCTGACTCTAAGGGGCGAATCATGGCTGCTTTTAAGCGCCTCGGTAGCAACTGTGGGCAAGGAAATCTTGAGTTCTTAAAAGAGATCTTGATGTTTTCCCATTACAGACATGAAAATCT...

CDS

Download CDS FASTA

507 bp · LXL04_005774|LXL04_005774|OH1004|CDS

ATGGAGGCTTTTCTCGAGAAGTTCCAACATGATCTTAAAGTCTTTAGCTTTGAAGAAATAAAGTCGGTCACCGACGACTTTAATAAGAACAAACTTATCGGAGAAGGTGGATTCGGGAAAGTGTATAGAGGAGTTGTCAACTCTGACTCTAAGGGGCGAATCATGGCTGCTTTTAAGCGCCTCGGTAGCAACTGTGGGCAAGGAAATCTTGAGTTCTTAAAAGAGATCTTGATGTTTTCCCATTACAGACATGAAAATCT...

Protein

Download Protein FASTA

168 aa · LXL04_005774|LXL04_005774|OH1004|PROTEIN

MEAFLEKFQHDLKVFSFEEIKSVTDDFNKNKLIGEGGFGKVYRGVVNSDSKGRIMAAFKRLGSNCGQGNLEFLKEILMFSHYRHENLITLLGYCDKNPEKILVYEHAAHGSLDVHLSSSTLTWTQRLEICLGAAKGLCYLHDPKETHQRIIHRDIKSSNILLDENWNC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005774`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005774

Location Chr01:173207890-173208396 (+)

Description Similar to FER: Receptor-like protein kinase FERONIA

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g54380`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018 Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005774 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT3G51550

ath:AT5G24010

ath:AT5G38990

ath:AT5G39000

ath:AT5G54380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577

Rank 1 · LXL04_005774 · OH-1004

Nucleus0.274

Rank 2 · LXL04_005774 · OH-1004

Cell membrane0.274

Rank 3 · LXL04_005774 · OH-1004

Endoplasmic reticulum0.065

Rank 4 · LXL04_005774 · OH-1004

Mitochondrion0.054

Rank 5 · LXL04_005774 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase27-165 aa

PF07714.24PK_Tyr_Ser-Thr29-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005774	`PF00069.32`	Pkinase	27	165	7.6e-22	78.7
LXL04_005774	`PF07714.24`	PK_Tyr_Ser-Thr	29	165	3.4e-26	92.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	49.677%	Swiss-Prot	moderate database homology
`Q9LK35`	Arabidopsis thaliana	Receptor-like protein kinase THESEUS 1	48.428%	Swiss-Prot	moderate database homology
`Q9FID9`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g38990	49.367%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	49.367%	Swiss-Prot	moderate database homology
`Q9FLW0`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g24010	48.750%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card