LXL04_005650 | RubberDandelionOmics

Gene overview

LXL04_005650

Reference: OH-1004 Chr: Chr01 Coordinates: 170003375-170005926 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

423 bp · LXL04_005650|LXL04_005650|OH1004|cDNA

ATGGAACAAAGTCACATCAAGAAGCAGATTAACTTCATCAAAAACTCACTCTTTGAACAGGGTTATCTGGATGAACAATTCATCCAACTTGAGGATCTACAAGATGATGCAAATCCTAACTTTGTTGAAGAAATCGTTACATCCTTTTACTCAGACTCAACGAGACTAATTCGCAATGTAGAGAACGCGTTGGAGAATTACCCTCTGGATTTTTGCAAGCTTGACGATTATATGCACCAATTCAAGGGTAGTAGCTCAAG...

CDS

Download CDS FASTA

423 bp · LXL04_005650|LXL04_005650|OH1004|CDS

ATGGAACAAAGTCACATCAAGAAGCAGATTAACTTCATCAAAAACTCACTCTTTGAACAGGGTTATCTGGATGAACAATTCATCCAACTTGAGGATCTACAAGATGATGCAAATCCTAACTTTGTTGAAGAAATCGTTACATCCTTTTACTCAGACTCAACGAGACTAATTCGCAATGTAGAGAACGCGTTGGAGAATTACCCTCTGGATTTTTGCAAGCTTGACGATTATATGCACCAATTCAAGGGTAGTAGCTCAAG...

Protein

Download Protein FASTA

140 aa · LXL04_005650|LXL04_005650|OH1004|PROTEIN

MEQSHIKKQINFIKNSLFEQGYLDEQFIQLEDLQDDANPNFVEEIVTSFYSDSTRLIRNVENALENYPLDFCKLDDYMHQFKGSSSSIGAKKVKVECTHFQECCKARNSQGCIRAFQQMKQEHATLKRKLEAYFQISRNE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005650`
TK1151 ID	TkA01G027970
OH-1004 ID	LXL04_005650
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005650

Location Chr01:170003375-170005926 (-)

Description Similar to AHP4: Histidine-containing phosphotransfer protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16360`	Functions as a two-component phosphorelay mediator between cytokinin sensor histidine kinases and response regulators (B-type ARRs).	No verified direct reference in this release
`At3g29350`	Functions as a two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulator (B-type ARRs).	Characterization of genes for two-component phosphorelay mediators with a single HPt domain in Arabidopsis thaliana.1998 · DOI: 10.1016/s0014-5793(98)01188-0

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0186100`	Functions as a two-component phosphorelay mediator between cytokinin sensor histidine kinases and response regulators (B-type ARRs).	No verified direct reference in this release
`Os05g0521300`	Functions as a two-component phosphorelay mediator between cytokinin sensor histidine kinases and response regulators (B-type ARRs).	No verified direct reference in this release
`Os01g0743800`	Functions as a two-component phosphorelay mediator between cytokinin sensor histidine kinases and response regulators (B-type ARRs).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005650 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0009557 antipodal cell differentiation Biological Process

GO:0009560 embryo sac egg cell differentiation Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009927 histidine phosphotransfer kinase activity Molecular Function

GO:0043424 protein histidine kinase binding Molecular Function

KEGG gene cross-reference

ath:AT3G16360

ath:AT3G29350

dosa:Os01g0743800

dosa:Os05g0186100

dosa:Os05g0521300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.633

Rank 1 · LXL04_005650 · OH-1004

Nucleus0.366

Rank 2 · LXL04_005650 · OH-1004

Cell membrane0.075

Rank 3 · LXL04_005650 · OH-1004

Mitochondrion0.074

Rank 4 · LXL04_005650 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_005650 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01627.29Hpt44-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005650	`PF01627.29`	Hpt	44	127	3.1e-10	40.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LU15`	Arabidopsis thaliana	Histidine-containing phosphotransfer protein 4	64.706%	Swiss-Prot	strong database homology
`Q9ZNV8`	Arabidopsis thaliana	Histidine-containing phosphotransfer protein 2	42.647%	Swiss-Prot	moderate database homology
`Q0DK78`	Oryza sativa subsp. japonica	Pseudo histidine-containing phosphotransfer protein 2	56.522%	Swiss-Prot	strong database homology
`Q6F303`	Oryza sativa subsp. japonica	Pseudo histidine-containing phosphotransfer protein 5	55.072%	Swiss-Prot	strong database homology
`Q0JJE3`	Oryza sativa subsp. japonica	Pseudo histidine-containing phosphotransfer protein 1	59.664%	Swiss-Prot	strong database homology

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