Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2028 bp · LXL04_005605|LXL04_005605|OH1004|cDNA
ATGGATGCCCTATTACATCCTGTCAATGATACCCATGGTGACGACACTCTTCTTGGTTGTATAGCGAAAGACACACCCGAAGTACAGCTTCTGGAAAAATGGGCACAACTGATAAACTCCTCAAATTTCCAGCTTAGCGATATAACAACCGGATTAGCCGATCTTCTTGCTGCAAAAGAACCCAGTAAGCTCACAGATCTTAAACCCCCCGCTAATCTCCCTTCTTCTACCATGAAACAATTTGTCATTCCAAAACTCGA...
2028 bp · LXL04_005605|LXL04_005605|OH1004|CDS
ATGGATGCCCTATTACATCCTGTCAATGATACCCATGGTGACGACACTCTTCTTGGTTGTATAGCGAAAGACACACCCGAAGTACAGCTTCTGGAAAAATGGGCACAACTGATAAACTCCTCAAATTTCCAGCTTAGCGATATAACAACCGGATTAGCCGATCTTCTTGCTGCAAAAGAACCCAGTAAGCTCACAGATCTTAAACCCCCCGCTAATCTCCCTTCTTCTACCATGAAACAATTTGTCATTCCAAAACTCGA...
Protein
Download Protein FASTA675 aa · LXL04_005605|LXL04_005605|OH1004|PROTEIN
MDALLHPVNDTHGDDTLLGCIAKDTPEVQLLEKWAQLINSSNFQLSDITTGLADLLAAKEPSKLTDLKPPANLPSSTMKQFVIPKLEETNISDQELPESVPDPEPQPKSSKKKKPNKFTAQKQGPKIWTEEEEVALTHAWISISKDDFKTIRPNPRGLWDRVLEHFHTAMGMGIYRNNDAASGKWRDLKAKTIKFNDIYNNLSVKYKNEKTDFDVFNRALEKYRREKGGKPFAHLKAWEVMRNAPKWVLGTETEAETETE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005605 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005605 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:169102617-169107166 (+) | ||||||||||||
| Description | Similar to SPT16: FACT complex subunit SPT16 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006337 nucleosome disassembly Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0032784 regulation of DNA-templated transcription elongation Biological Process GO:0000791 euchromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0035101 FACT complex Cellular Component GO:0031491 nucleosome binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT4G10710 dosa:Os04g0321600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.