LXL04_005569 | RubberDandelionOmics

Gene overview

LXL04_005569

Reference: OH-1004 Chr: Chr01 Coordinates: 168531037-168535393 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2268 bp · LXL04_005569|LXL04_005569|OH1004|cDNA

ATGGATCTTCACCCAGGTACAAATGGAACTGCAAACAGCCAATCAGATGGTTTAAACAGCACTAATGGTGGCAATGGTGTTGTTGAAGGTGGCAAACGTGTTCATTCTGCCAAAGTGCCAGAATTAACAAAACTAAACAGTTTAGAGAATGCATCTTCTCAGTCACTCTTCAAAATTCTGCATAAGATTCTTGATGACAGCATTGAGAACAAGAAAGAAGATGTACCTGATAGAGTCGCCAGTGTGTTAAAAAAGCTAAT...

CDS

Download CDS FASTA

2268 bp · LXL04_005569|LXL04_005569|OH1004|CDS

ATGGATCTTCACCCAGGTACAAATGGAACTGCAAACAGCCAATCAGATGGTTTAAACAGCACTAATGGTGGCAATGGTGTTGTTGAAGGTGGCAAACGTGTTCATTCTGCCAAAGTGCCAGAATTAACAAAACTAAACAGTTTAGAGAATGCATCTTCTCAGTCACTCTTCAAAATTCTGCATAAGATTCTTGATGACAGCATTGAGAACAAGAAAGAAGATGTACCTGATAGAGTCGCCAGTGTGTTAAAAAAGCTAAT...

Protein

Download Protein FASTA

755 aa · LXL04_005569|LXL04_005569|OH1004|PROTEIN

MDLHPGTNGTANSQSDGLNSTNGGNGVVEGGKRVHSAKVPELTKLNSLENASSQSLFKILHKILDDSIENKKEDVPDRVASVLKKLIQMTEHQISKQADNFKKQKNIYKIREEKYQLKFKVLGTLVTGVSEENKLINNRLQLIKSEKKKMEDIKKLEDVELIRLRKEKNDCNSEISKLKDEIEAIKDTYETKCMQLETHAIEVESELKKKITDLENHLTVSRKKVKELEKFTESKFLRWKNKERGYINFMDFQHGSLKEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005569`
TK1151 ID	TkA01G033540
OH-1004 ID	LXL04_005569
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	93.200
Protein coverage (%)	TK1151 96.914 / OH-1004 62.384 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005569

Location Chr01:168531037-168535393 (+)

Description Similar to KIN14J: Kinesin-like protein KIN-14J

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63640`	Kinesin-like protein KIN-14J.	No verified direct reference in this release
`At5g41310`	Kinesin-like protein KIN-14K.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0744000`	Kinesin-like protein KIN-14C.	No verified direct reference in this release
`Os05g0521300`	Kinesin-like protein KIN-14K.	No verified direct reference in this release
`UniProt: Q0E2L3`	Kinesin-like protein KIN-14D.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005569 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007017 microtubule-based process Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005874 microtubule Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G63640

ath:AT5G41310

dosa:Os01g0744000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.685

Rank 1 · LXL04_005569 · OH-1004

Nucleus0.242

Rank 2 · LXL04_005569 · OH-1004

Golgi apparatus0.072

Rank 3 · LXL04_005569 · OH-1004

Cell membrane0.068

Rank 4 · LXL04_005569 · OH-1004

Lysosome / Vacuole0.056

Rank 5 · LXL04_005569 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd304-465 aa

PF00225.30Kinesin325-467 aa

PF00225.30Kinesin469-604 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005569	`PF16796.12`	Microtub_bd	304	465	1.5e-45	155.6
LXL04_005569	`PF00225.30`	Kinesin	325	467	6.5e-94	315.3
LXL04_005569	`PF00225.30`	Kinesin	469	604	6.5e-94	315.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B3H6Z8`	Arabidopsis thaliana	Kinesin-like protein KIN-14J	55.698%	Swiss-Prot	strong database homology
`F4JX00`	Arabidopsis thaliana	Kinesin-like protein KIN-14K	50.448%	Swiss-Prot	strong database homology
`Q5JKW1`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14C	55.766%	Swiss-Prot	strong database homology
`B9FL70`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14K	55.766%	Swiss-Prot	strong database homology
`Q0E2L3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14D	50.943%	Swiss-Prot	strong database homology

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