LXL04_005550 | RubberDandelionOmics

Gene overview

LXL04_005550

Reference: OH-1004 Chr: Chr01 Coordinates: 168238870-168239967 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

468 bp · LXL04_005550|LXL04_005550|OH1004|cDNA

ATGAATCTCAAGGGAAAACTCCTTAGGTCTCAAGAAAAATTGAAGCGGATTCGATCGCCGCCGCTTGTGATTGATCGGTTCATGGAGACAATCAATCAAAATAACGGTATCGTAGGTTCAATTGCAAGATCCGATTACTATGTTAGGATTCTTAATActattaattgggatcaattgaacCCTTGGCATTCGTGGCTTTGCAACGTCATCCACAAGCGATTGTTGTGGTGCTGTCGCATGAGGCTGATTCTACTTAGCCA...

CDS

Download CDS FASTA

468 bp · LXL04_005550|LXL04_005550|OH1004|CDS

ATGAATCTCAAGGGAAAACTCCTTAGGTCTCAAGAAAAATTGAAGCGGATTCGATCGCCGCCGCTTGTGATTGATCGGTTCATGGAGACAATCAATCAAAATAACGGTATCGTAGGTTCAATTGCAAGATCCGATTACTATGTTAGGATTCTTAATACTATTAATTGGGATCAATTGAACCCTTGGCATTCGTGGCTTTGCAACGTCATCCACAAGCGATTGTTGTGGTGCTGTCGCATGAGGCTGATTCTACTTAGCCA...

Protein

Download Protein FASTA

155 aa · LXL04_005550|LXL04_005550|OH1004|PROTEIN

MNLKGKLLRSQEKLKRIRSPPLVIDRFMETINQNNGIVGSIARSDYYVRILNTINWDQLNPWHSWLCNVIHKRLLWCCRMRLILLSQSEKSNATYSVATKVHTNALKYIEHTISEIFEEINSAIFDELYRRNGEFHISCISYDVSFYDWFQLVIP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005550`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005550

Location Chr01:168238870-168239967 (+)

Description Similar to 26S proteasome regulatory subunit 6B homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58290`	The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins.	A mutation in the Proteosomal Regulatory Particle AAA-ATPase-3 in Arabidopsis impairs the light-specific hypocotyl elongation response elicited by a glutamate receptor agonist, BMAA.2009 · DOI: 10.1007/s11103-009-9489-7

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005550 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008540 proteasome regulatory particle, base subcomplex Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0036402 proteasome-activating activity Molecular Function

KEGG gene cross-reference

ath:AT5G58290

han:110873361

sot:102577768

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.397

Rank 1 · LXL04_005550 · OH-1004

Cytoplasm0.391

Rank 2 · LXL04_005550 · OH-1004

Mitochondrion0.163

Rank 3 · LXL04_005550 · OH-1004

Cell membrane0.060

Rank 4 · LXL04_005550 · OH-1004

Golgi apparatus0.049

Rank 5 · LXL04_005550 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SEI4`	Arabidopsis thaliana	26S proteasome regulatory subunit 6B homolog	51.020%	Swiss-Prot	moderate database homology

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