LXL04_005403 | RubberDandelionOmics

Gene overview

LXL04_005403

Reference: OH-1004 Chr: Chr01 Coordinates: 162684675-162689064 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1206 bp · LXL04_005403|LXL04_005403|OH1004|cDNA

ATGAAGCAAAATCACATGATACATGATTACTATCATCTCTTCTACAATTACCTCTTCCATCGAATATACAATCGATTATCCGTCTTGCTCGTTGCTACTGCGATTCATATCCGGGGTTTTGAAATTACAAACTTGAACCCTCTTTTACTCCGTCAAATGGAAAATAAGCAGAGGTTTAGCCCCGTAGATATGGAAGGCTCGATTTGGGACGAAGGTGGCAAAACTGAAATCGTGCAAATATTAATTTCACATGACGAAGA...

CDS

Download CDS FASTA

1206 bp · LXL04_005403|LXL04_005403|OH1004|CDS

ATGAAGCAAAATCACATGATACATGATTACTATCATCTCTTCTACAATTACCTCTTCCATCGAATATACAATCGATTATCCGTCTTGCTCGTTGCTACTGCGATTCATATCCGGGGTTTTGAAATTACAAACTTGAACCCTCTTTTACTCCGTCAAATGGAAAATAAGCAGAGGTTTAGCCCCGTAGATATGGAAGGCTCGATTTGGGACGAAGGTGGCAAAACTGAAATCGTGCAAATATTAATTTCACATGACGAAGA...

Protein

Download Protein FASTA

401 aa · LXL04_005403|LXL04_005403|OH1004|PROTEIN

MKQNHMIHDYYHLFYNYLFHRIYNRLSVLLVATAIHIRGFEITNLNPLLLRQMENKQRFSPVDMEGSIWDEGGKTEIVQILISHDEDSINAIQFVYVVNGKLVRSKIHGKVTSQTGFAAVGFDYPNEYLVSVSGQHREFSRDLASITFGTNKRSYGPFGSGGGPDDSCKKFAYYFSPKTSFGGFHGCVRGGDGTGSLKLSIGVYIRPIEYLLKQILIIDLTLATTAFHPMSPRTGPLLGGMLKLGTKRIKGTIWDECEKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005403`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005403

Location Chr01:162684675-162689064 (+)

Description Similar to RTM1: Inactive protein RESTRICTED TEV MOVEMENT 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16460`	Jacalin-related lectin 34.	No verified direct reference in this release
`UniProt: D9UBI3`	Unable to mediate restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance.	No verified direct reference in this release
`UniProt: D9UBG0`	Unable to mediate restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance.	No verified direct reference in this release
`At1g05760`	Required for the restriction of long-distance movement of the pathogenic tobacco etch virus (TEV) without causing a hypersensitive response or inducing systemic acquired resistance.	Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus.2000 · DOI: 10.1073/pnas.97.1.489 Arabidopsis RTM2 gene is necessary for specific restriction of tobacco etch virus and encodes an unusual small heat shock-like protein.2000 · DOI: 10.1105/tpc.12.4.569 Identification and characterization of a locus (RTM1) that restricts long-distance movement of tobacco etch virus in Arabidopsis thaliana.1998 · DOI: 10.1046/j.1365-313x.1998.00105.x
`At1g05770`	Jacalin-related lectin 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005403 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009615 response to virus Biological Process

GO:0046741 transport of virus in host, tissue to tissue Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G05760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · LXL04_005403 · OH-1004

Nucleus0.247

Rank 2 · LXL04_005403 · OH-1004

Cell membrane0.120

Rank 3 · LXL04_005403 · OH-1004

Extracellular0.110

Rank 4 · LXL04_005403 · OH-1004

Lysosome / Vacuole0.108

Rank 5 · LXL04_005403 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01419.23Jacalin65-189 aa

PF01419.23Jacalin250-386 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005403	`PF01419.23`	Jacalin	65	189	5e-43	147.5
LXL04_005403	`PF01419.23`	Jacalin	250	386	5e-43	147.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04310`	Arabidopsis thaliana	Jacalin-related lectin 34	27.679%	Swiss-Prot	weak database homology
`D9UBI3`	Arabidopsis thaliana	Inactive protein RESTRICTED TEV MOVEMENT 1	39.597%	Swiss-Prot	weak database homology
`D9UBG0`	Arabidopsis thaliana	Inactive protein RESTRICTED TEV MOVEMENT 1	39.597%	Swiss-Prot	weak database homology
`Q9SE37`	Arabidopsis thaliana	Protein RESTRICTED TEV MOVEMENT 1	39.597%	Swiss-Prot	weak database homology
`Q9MA49`	Arabidopsis thaliana	Jacalin-related lectin 2	33.333%	Swiss-Prot	weak database homology

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