LXL04_005318 | RubberDandelionOmics

Gene overview

LXL04_005318

Reference: OH-1004 Chr: Chr01 Coordinates: 160338157-160344602 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1965 bp · LXL04_005318|LXL04_005318|OH1004|cDNA

ATGGGGATTCTAAGCTTTTGTTTCTTGGTTTTCTCCTTACATAAACTCGTTGATGCTCAAATAGCCACTGAATCAAATGAAGTGACGGCTATTAAGAAACTTATAGATTATTGGGGTTTGAGTTCAAAGGTAAATTTGTCAGTTGACCCATGTACTACCGATGCGACTTGGGCTATGGAAAATGCAAATCCACGAATTGCTTGTGATTGTTCTAACGTCTGTCACATAACTCACTTGAAGATATGTGCTTTGGATATATC...

CDS

Download CDS FASTA

1965 bp · LXL04_005318|LXL04_005318|OH1004|CDS

ATGGGGATTCTAAGCTTTTGTTTCTTGGTTTTCTCCTTACATAAACTCGTTGATGCTCAAATAGCCACTGAATCAAATGAAGTGACGGCTATTAAGAAACTTATAGATTATTGGGGTTTGAGTTCAAAGGTAAATTTGTCAGTTGACCCATGTACTACCGATGCGACTTGGGCTATGGAAAATGCAAATCCACGAATTGCTTGTGATTGTTCTAACGTCTGTCACATAACTCACTTGAAGATATGTGCTTTGGATATATC...

Protein

Download Protein FASTA

654 aa · LXL04_005318|LXL04_005318|OH1004|PROTEIN

MGILSFCFLVFSLHKLVDAQIATESNEVTAIKKLIDYWGLSSKVNLSVDPCTTDATWAMENANPRIACDCSNVCHITHLKICALDISGELPQELFQLTELMDLNLGQNVLSGSIPREIGRLFKMQYLSLGINNFTGFVPAELGNLTKLKSLSFSSNGFNGPLPVDLGNLTSLEQLYIDSSGVSGPIPQELSNLKSLQTVWASDNGFTGKLPEFIGTFTKLKTLRLEGTALEGPIPNSYAALTQLEDLRIGDLGGEDSTLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005318`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005318

Location Chr01:160338157-160344602 (-)

Description Similar to At1g56130: Probable LRR receptor-like serine/threonine-protein kinase At1g56130

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g07650`	Probable LRR receptor-like serine/threonine-protein kinase At1g07650.	No verified direct reference in this release
`At1g53430`	Probable LRR receptor-like serine/threonine-protein kinase At1g53430.	No verified direct reference in this release
`At3g14840`	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005318 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53430

ath:AT1G56130

ath:AT1G56140

ath:AT3G14840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.425

Rank 1 · LXL04_005318 · OH-1004

Extracellular0.151

Rank 2 · LXL04_005318 · OH-1004

Endoplasmic reticulum0.137

Rank 3 · LXL04_005318 · OH-1004

Lysosome / Vacuole0.094

Rank 4 · LXL04_005318 · OH-1004

Cytoplasm0.089

Rank 5 · LXL04_005318 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_1467-179 aa

PF23598.2LRR_14165-257 aa

PF13855.13LRR_8268-326 aa

PF12799.14LRR_4291-328 aa

PF11721.15Malectin403-588 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005318	`PF23598.2`	LRR_14	67	179	1.1e-22	81.0
LXL04_005318	`PF23598.2`	LRR_14	165	257	1.1e-22	81.0
LXL04_005318	`PF13855.13`	LRR_8	268	326	2e-18	66.6
LXL04_005318	`PF12799.14`	LRR_4	291	328	5e-14	52.7
LXL04_005318	`PF11721.15`	Malectin	403	588	7.4e-40	137.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH2`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	42.587%	Swiss-Prot	moderate database homology
`C0LGH3`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	41.838%	Swiss-Prot	moderate database homology
`C0LGE0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	36.783%	Swiss-Prot	moderate database homology
`C0LGG8`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g53430	33.974%	Swiss-Prot	moderate database homology
`C0LGN2`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840	37.500%	Swiss-Prot	moderate database homology

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