Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1038 bp · LXL04_005187|LXL04_005187|OH1004|cDNA
ATGAAGAAAGCCGGAGCCGAGAAGAAGAGGGCCCGGCGATCCTCCGCTGCCGTTAAAAACGCCGCCGGCCGAGATCCAGCCACTGATACTCCTCCTAGGAAACAAGCAAACAAGAAAGATGTGTTCCAATTATTTGCTGAAAAAGTTCGAGACCATAAAGACTTGGTTTCCAGGTGGGCCGTGCTACAAGAAACGCGAGTCGAGTACTTTAGGGGAAAAGATTTTGTTACTTTCTTAAGAAACCATCCGGAACTCAAAGA...
1038 bp · LXL04_005187|LXL04_005187|OH1004|CDS
ATGAAGAAAGCCGGAGCCGAGAAGAAGAGGGCCCGGCGATCCTCCGCTGCCGTTAAAAACGCCGCCGGCCGAGATCCAGCCACTGATACTCCTCCTAGGAAACAAGCAAACAAGAAAGATGTGTTCCAATTATTTGCTGAAAAAGTTCGAGACCATAAAGACTTGGTTTCCAGGTGGGCCGTGCTACAAGAAACGCGAGTCGAGTACTTTAGGGGAAAAGATTTTGTTACTTTCTTAAGAAACCATCCGGAACTCAAAGA...
Protein
Download Protein FASTA345 aa · LXL04_005187|LXL04_005187|OH1004|PROTEIN
MKKAGAEKKRARRSSAAVKNAAGRDPATDTPPRKQANKKDVFQLFAEKVRDHKDLVSRWAVLQETRVEYFRGKDFVTFLRNHPELKDILESDRHLEVEDIVNVLLTKNLLVRCDRVVKTVRPGKRKLSTWPAHLEIYPDQEFSDNDAFFAWTFVNKRPLWQTLLSLSWPVLTLAICLFPVYPHQAKLLILYSCAGVLLLILCLLLVRALIFGASWILLGRRIWIFPNILAEEATLRELFRFWPKKDEEEKPKLTARFFFA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005187 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005187 |
|---|---|
| Location | Chr01:157445550-157447602 (+) |
| Description | Similar to sec62: Translocation protein sec62 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0031204 post-translational protein targeting to membrane, translocation Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0030867 rough endoplasmic reticulum membrane Cellular Component GO:0031207 Sec62/Sec63 complex Cellular Component GO:0008320 protein transmembrane transporter activity Molecular Function |
| KEGG gene cross-reference | ago:AGOS_ABR196C kla:KLLA0_E24157g spo:2542396 yli:2907281 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03839.22Sec62124-230 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005187 | PF03839.22 | Sec62 | 124 | 230 | 2.3e-14 | 54.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.