Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2799 bp · LXL04_005096|LXL04_005096|OH1004|cDNA
ATGGTGAAGTCGTACCTCCGGTATGAGCCGGCGACGGCGTTCGGAGTGATTGCGTCAGTGGATACTAACATCACATACGACACCACCGGTAAACATCTACTAGCTCCGGCTCTTGAGAAGGTCGGCGTTTGGCATGTCCGTCAAGGCGTCTGTGCTAAAACGCTTACGCCTTCTACCCAAAACCGTGGCCCTTCTTTAGCTGTTACTTCCATTGCAGCCGTGCCTTCTTCTTCATCTCTGATAGCCAGTGGGCACGCCGA...
2799 bp · LXL04_005096|LXL04_005096|OH1004|CDS
ATGGTGAAGTCGTACCTCCGGTATGAGCCGGCGACGGCGTTCGGAGTGATTGCGTCAGTGGATACTAACATCACATACGACACCACCGGTAAACATCTACTAGCTCCGGCTCTTGAGAAGGTCGGCGTTTGGCATGTCCGTCAAGGCGTCTGTGCTAAAACGCTTACGCCTTCTACCCAAAACCGTGGCCCTTCTTTAGCTGTTACTTCCATTGCAGCCGTGCCTTCTTCTTCATCTCTGATAGCCAGTGGGCACGCCGA...
Protein
Download Protein FASTA932 aa · LXL04_005096|LXL04_005096|OH1004|PROTEIN
MVKSYLRYEPATAFGVIASVDTNITYDTTGKHLLAPALEKVGVWHVRQGVCAKTLTPSTQNRGPSLAVTSIAAVPSSSSLIASGHADGSIRIWDCERGTCETTLNGHKGATTILRFNKTGSILASGSKDNDIVIWDVIGEVGLYRLRGHRDQITDLAFLDSGKKLVSASKDKFLRVWDLDTQHCTQIIGGHHSEIWSIDVDPEQRYLVTGSADSELRFYTIKRENTDTDNKDTSIENKWEILKPFGEIQRQNKERVATLR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005096 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005096 |
|---|---|
| Location | Chr01:154440665-154444815 (-) |
| Description | Similar to Wdr3: WD repeat-containing protein 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0030686 90S preribosome Cellular Component GO:0031965 nuclear membrane Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0282623 hsa:10885 mmu:269470 sce:YLR129W spo:2540971 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23869.2Beta-prop_WDR75_1st18-137 aaPF24817.2WD40_WDHD1_1st22-187 aaPF23381.2Beta-prop_IFT122_1st23-229 aaPF25174.2Beta-prop_THOC324-220 aaPF25175.2Beta-prop_WDR525-105 aaPF24782.3WD40_MABP1-WDR62_2nd27-136 aaPF25171.2Beta-prop_WDR36-Utp21_1st30-219 aaPF25173.2Beta-prop_WDR3_1st31-221 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005096 | PF23869.2 | Beta-prop_WDR75_1st | 18 | 137 | 1.2e-17 | 64.9 |
| LXL04_005096 | PF24817.2 | WD40_WDHD1_1st | 22 | 187 | 2.3e-54 | 185.3 |
| LXL04_005096 | PF23381.2 | Beta-prop_IFT122_1st | 23 | 229 | 1.7e-94 | 316.9 |
| LXL04_005096 | PF25174.2 | Beta-prop_THOC3 | 24 | 220 | 2.1e-78 | 263.8 |
| LXL04_005096 | PF25175.2 | Beta-prop_WDR5 | 25 | 105 | 1.4e-88 | 297.7 |
| LXL04_005096 | PF24782.3 | WD40_MABP1-WDR62_2nd | 27 | 136 | 8.8e-30 | 104.5 |
| LXL04_005096 | PF25171.2 | Beta-prop_WDR36-Utp21_1st | 30 | 219 | 5.8e-34 | 118.4 |
| LXL04_005096 | PF25173.2 | Beta-prop_WDR3_1st | 31 | 221 | 1.1e-123 | 410.5 |
| LXL04_005096 | PF24807.2 | WD40_CDC20-Fz | 31 | 225 | 7.6e-56 | 190.3 |
| LXL04_005096 | PF23409.2 | Beta-prop_EML | 40 | 136 | 2.3e-30 | 106.7 |
| LXL04_005096 | PF25047.1 | Beta-prop_TEP1_2nd | 42 | 220 | 3.7e-35 | 122.0 |
| LXL04_005096 | PF24814.2 | WD40_Prp19 | 43 | 136 | 1.3e-68 | 231.8 |
| LXL04_005096 | PF25168.2 | Beta-prop_WDR36-Utp21_2nd | 44 | 183 | 1.4e-39 | 137.0 |
| LXL04_005096 | PF23410.5 | Beta-prop_VPS8 | 58 | 113 | 4.7e-11 | 43.0 |
| LXL04_005096 | PF00400.39 | WD40 | 62 | 94 | 1.5e-76 | 250.3 |
| LXL04_005096 | PF25172.2 | Beta-prop_WDR3_2nd | 63 | 178 | 1.5e-163 | 543.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.