LXL04_004956 | RubberDandelionOmics

Gene overview

LXL04_004956

Reference: OH-1004 Chr: Chr01 Coordinates: 150935014-150936190 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

789 bp · LXL04_004956|LXL04_004956|OH1004|cDNA

ATGGCCAATTACGAAGAATCAAGCCCTCTTTTAGCAAATCAATCTCTTCAGGGAGACGGCAACAACGATCCACAATCAAACGTAACCAATACCGATGAAAATAGCAAGAAATCCACCGACAAAACCTCGATCCCCAATTCACAGACAGCTGCTGTGGCGGCGGAGTCGAAGCAGTCTCCACCTCCGGTAGCATCATGCTTTCATCATGCTGTTTATGGCTGGACTGCTGACGGATTGCCATTGACTAATGGCGGTGCTAA...

CDS

Download CDS FASTA

789 bp · LXL04_004956|LXL04_004956|OH1004|CDS

ATGGCCAATTACGAAGAATCAAGCCCTCTTTTAGCAAATCAATCTCTTCAGGGAGACGGCAACAACGATCCACAATCAAACGTAACCAATACCGATGAAAATAGCAAGAAATCCACCGACAAAACCTCGATCCCCAATTCACAGACAGCTGCTGTGGCGGCGGAGTCGAAGCAGTCTCCACCTCCGGTAGCATCATGCTTTCATCATGCTGTTTATGGCTGGACTGCTGACGGATTGCCATTGACTAATGGCGGTGCTAA...

Protein

Download Protein FASTA

262 aa · LXL04_004956|LXL04_004956|OH1004|PROTEIN

MANYEESSPLLANQSLQGDGNNDPQSNVTNTDENSKKSTDKTSIPNSQTAAVAAESKQSPPPVASCFHHAVYGWTADGLPLTNGGANVVGEPMPRAQWDSGLFACLGRNDEFCSSDLEVCLVGSVAPCVIYGSNVERLGSAPGTFANHCLPYTGLYLIGNSFFGWNCMAPWFSYPTRTTIRRKFNLQGNWESMSKSCGGCCDVDEEQLEQAEIACDFATHVCCHPCALCQEGREIRRRVPHPGFGAQPMLVMMPPGDQTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004956`
TK1151 ID	TkA01G093660
OH-1004 ID	LXL04_004956
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.900
Protein coverage (%)	TK1151 98.969 / OH-1004 73.282 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004956

Location Chr01:150935014-150936190 (+)

Description Similar to CNR8: Cell number regulator 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40935`	May be involved in cadmium resistance.	No verified direct reference in this release
`At3g18450`	May be involved in heavy metals transport.	No verified direct reference in this release
`At1g68630`	May be involved in heavy metals transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004956 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G68630

ath:AT2G40935

ath:AT3G18450

zma:100193499

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.631

Rank 1 · LXL04_004956 · OH-1004

Cytoplasm0.151

Rank 2 · LXL04_004956 · OH-1004

Endoplasmic reticulum0.107

Rank 3 · LXL04_004956 · OH-1004

Nucleus0.100

Rank 4 · LXL04_004956 · OH-1004

Lysosome / Vacuole0.079

Rank 5 · LXL04_004956 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04749.23PLAC898-234 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004956	`PF04749.23`	PLAC8	98	234	3.7e-20	73.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S8T8`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 10	33.333%	Swiss-Prot	moderate database homology
`Q9LS45`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 5	29.825%	Swiss-Prot	weak database homology
`Q9SX26`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 12	26.282%	Swiss-Prot	weak database homology

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