LXL04_004949 | RubberDandelionOmics

Gene overview

LXL04_004949

Reference: OH-1004 Chr: Chr01 Coordinates: 150751408-150753141 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

435 bp · LXL04_004949|LXL04_004949|OH1004|cDNA

ATGGCGATAAATCCACAAGTTAATAACGacaacaataacaacaaaaGAACAGTTCCATTTTCTTTTTATGTAACAAAGCAGAATAGTATGTTACCTACACGAGCTCAAATCGAGAACGGACTTGCATTTGCTTTTGCTGCTTTTGTTGCTTATGGTGGTTATCTTAGTCGGTCCAAGGCTCGACCAGTTTCCACATCCCACAAATTGTATAAAGGGAGTTTTCAATCTGAAATGACAAGAAGTGAGGCTGCTCTTATTCT...

CDS

Download CDS FASTA

435 bp · LXL04_004949|LXL04_004949|OH1004|CDS

ATGGCGATAAATCCACAAGTTAATAACGACAACAATAACAACAAAAGAACAGTTCCATTTTCTTTTTATGTAACAAAGCAGAATAGTATGTTACCTACACGAGCTCAAATCGAGAACGGACTTGCATTTGCTTTTGCTGCTTTTGTTGCTTATGGTGGTTATCTTAGTCGGTCCAAGGCTCGACCAGTTTCCACATCCCACAAATTGTATAAAGGGAGTTTTCAATCTGAAATGACAAGAAGTGAGGCTGCTCTTATTCT...

Protein

Download Protein FASTA

144 aa · LXL04_004949|LXL04_004949|OH1004|PROTEIN

MAINPQVNNDNNNNKRTVPFSFYVTKQNSMLPTRAQIENGLAFAFAAFVAYGGYLSRSKARPVSTSHKLYKGSFQSEMTRSEAALILGVRGSITVDKVTEAHRRLMVANHPDMGGSHYLASKINEAKLMLIRNPQNTDSISHTD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004949`
TK1151 ID	TkA01G094790
OH-1004 ID	LXL04_004949
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004949

Location Chr01:150751408-150753141 (-)

Description Similar to TIM14-3: Mitochondrial import inner membrane translocase subunit TIM14-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03030`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release
`At3g09700`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release
`At2g35795`	Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004949 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030150 protein import into mitochondrial matrix Biological Process

GO:0001405 PAM complex, Tim23 associated import motor Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009536 plastid Cellular Component

GO:0001671 ATPase activator activity Molecular Function

KEGG gene cross-reference

afm:AFUA_2G02700

ath:AT2G35795

ath:AT3G09700

ath:AT5G03030

fgr:FGSG_06723

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.666

Rank 1 · LXL04_004949 · OH-1004

Plastid0.134

Rank 2 · LXL04_004949 · OH-1004

Cytoplasm0.093

Rank 3 · LXL04_004949 · OH-1004

Nucleus0.067

Rank 4 · LXL04_004949 · OH-1004

Peroxisome0.047

Rank 5 · LXL04_004949 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30912.1TIM141_C68-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004949	`PF30912.1`	TIM141_C	68	139	6.2e-33	113.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYY2`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-3	67.073%	Swiss-Prot	moderate database homology
`Q9SF33`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-2	63.415%	Swiss-Prot	moderate database homology
`Q8RV04`	Arabidopsis thaliana	Mitochondrial import inner membrane translocase subunit TIM14-1	59.756%	Swiss-Prot	moderate database homology

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