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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_004623
Reference: OH-1004 Chr: Chr01 Coordinates: 141778519-141797924 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6807 bp · LXL04_004623|LXL04_004623|OH1004|cDNA

ATGGTGTATCTCCCCCAATATGGGTTTTTGCCCCAATATGGGGTGTACCCCAATGTAGGGGATTTGCCCCAATATGAGGTGTACCCCACTATGGGGAATTTGCCCCAAAATGGGGTCTTTGTCCCAGTATGGGGGGGTTTGCCCCAATATGGGGGATTTTCCCCAATAAGGGGGGTTTTGCCCCAATATGGGGTATACCCTAATATGGGGGATTTGCCCCAAAATGGGGTATTTGACCCAATATGGGGGGTTTGCCCCAA...

CDS

Download CDS FASTA

6807 bp · LXL04_004623|LXL04_004623|OH1004|CDS

ATGGTGTATCTCCCCCAATATGGGTTTTTGCCCCAATATGGGGTGTACCCCAATGTAGGGGATTTGCCCCAATATGAGGTGTACCCCACTATGGGGAATTTGCCCCAAAATGGGGTCTTTGTCCCAGTATGGGGGGGTTTGCCCCAATATGGGGGATTTTCCCCAATAAGGGGGGTTTTGCCCCAATATGGGGTATACCCTAATATGGGGGATTTGCCCCAAAATGGGGTATTTGACCCAATATGGGGGGTTTGCCCCAA...

Protein

Download Protein FASTA

2268 aa · LXL04_004623|LXL04_004623|OH1004|PROTEIN

MVYLPQYGFLPQYGVYPNVGDLPQYEVYPTMGNLPQNGVFVPVWGGLPQYGGFSPIRGVLPQYGVYPNMGDLPQNGVFDPIWGVCPNMGSMLQYGVFAPIWGFCPNMGCTRIPNMRKTPIWGFSPNPRSLDLSTRFPAFLRSNPARFSFSQPISKHSVDEFLPYDEEPEGDPKLPKRQTKTMTDLVDTRARSTDVERGIAGLPGQTDATNTLALLAEGRSNHTMPPRRRGRPTGTGGTPPVFDPVAMETIIAERPHEFAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_004623
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_004623
LocationChr01:141778519-141797924 (-)
DescriptionSimilar to TY3B-G: Transposon Ty3-G Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004623 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function
KEGG gene cross-reference
sce:YGR109W-B
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.558
Rank 1 · LXL04_004623 · OH-1004
Nucleus0.350
Rank 2 · LXL04_004623 · OH-1004
Mitochondrion0.120
Rank 3 · LXL04_004623 · OH-1004
Cell membrane0.061
Rank 4 · LXL04_004623 · OH-1004
Endoplasmic reticulum0.049
Rank 5 · LXL04_004623 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19259.5Ty3_capsid251-414 aa
PF03732.25PEG10_N-capsid255-332 aa
PF00098.29zf-CCHC509-526 aa
PF00078.33RVT_1617-716 aa
PF00078.33RVT_1818-874 aa
PF31073.1DUF88031042-1109 aa
PF24626.2SH3_Tf2-11045-1109 aa
PF19259.5Ty3_capsid1326-1492 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_004623PF19259.5Ty3_capsid2514141.3e-2074.4
LXL04_004623PF03732.25PEG10_N-capsid2553322.6e-2073.2
LXL04_004623PF00098.29zf-CCHC5095261.4e-0938.3
LXL04_004623PF00078.33RVT_16177169.1e-68228.8
LXL04_004623PF00078.33RVT_18188749.1e-68228.8
LXL04_004623PF31073.1DUF8803104211092.3e-1660.1
LXL04_004623PF24626.2SH3_Tf2-1104511092.1e-57191.8
LXL04_004623PF19259.5Ty3_capsid132614921.3e-2074.4
LXL04_004623PF03732.25PEG10_N-capsid133214102.6e-2073.2
LXL04_004623PF00098.29zf-CCHC158716041.4e-0938.3
LXL04_004623PF00078.33RVT_1169517949.1e-68228.8
LXL04_004623PF00078.33RVT_1189619529.1e-68228.8
LXL04_004623PF31073.1DUF8803212021872.3e-1660.1
LXL04_004623PF24626.2SH3_Tf2-1212321872.1e-57191.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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