LXL04_004615 | RubberDandelionOmics

Gene overview

LXL04_004615

Reference: OH-1004 Chr: Chr01 Coordinates: 141630453-141632204 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_004615|LXL04_004615|OH1004|cDNA

ATGCCCATTATTGAAACATCACCTTGGAAAGCTGATTTGCTTCTTGTCTTATTTGTGGGTATTTTAATTTCATCAAGTACAAAAGGAATCAGTCAGCCATTAATTCCTCCATTAATTCCTGGAATCATGGTATTTGGAGATTCGATAGTCACAGTCGGAAACAATAACAACCTCCGAACGCTTGTTAAATCAAACTTCCCTCCTTATGGCAGAGACTTCATCAACCAACACCCCAGTGGCAGTTTTGTATTTAATACTTT...

CDS

Download CDS FASTA

1080 bp · LXL04_004615|LXL04_004615|OH1004|CDS

ATGCCCATTATTGAAACATCACCTTGGAAAGCTGATTTGCTTCTTGTCTTATTTGTGGGTATTTTAATTTCATCAAGTACAAAAGGAATCAGTCAGCCATTAATTCCTCCATTAATTCCTGGAATCATGGTATTTGGAGATTCGATAGTCACAGTCGGAAACAATAACAACCTCCGAACGCTTGTTAAATCAAACTTCCCTCCTTATGGCAGAGACTTCATCAACCAACACCCCAGTGGCAGTTTTGTATTTAATACTTT...

Protein

Download Protein FASTA

359 aa · LXL04_004615|LXL04_004615|OH1004|PROTEIN

MPIIETSPWKADLLLVLFVGILISSSTKGISQPLIPPLIPGIMVFGDSIVTVGNNNNLRTLVKSNFPPYGRDFINQHPSGSFVFNTLGVGENLGLTKYPPEILSKEAKGKNLLLGANFASGGSGYYESTARLYNTISLRKQLEYYKEYQMKLVDVAGPSNATSLIRGSIYLVSAGASDFVQNYYVNPLLNKFYKPHQFSDILIKAYSHFIQELYRLGARKIGVSNIPPIGCLPASITIFGKDKNECVTKMNLVAQYFNKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004615`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004615

Location Chr01:141630453-141632204 (+)

Description Similar to At5g22810: GDSL esterase/lipase At5g22810

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22810`	GDSL esterase/lipase At5g22810.	No verified direct reference in this release
`At5g03820`	GDSL esterase/lipase At5g03820.	No verified direct reference in this release
`At5g03810`	GDSL esterase/lipase At5g03810.	No verified direct reference in this release
`At3g53100`	GDSL esterase/lipase At3g53100.	No verified direct reference in this release
`At3g16370`	GDSL esterase/lipase APG.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004615 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT3G16370

ath:AT3G53100

ath:AT5G03810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.610

Rank 1 · LXL04_004615 · OH-1004

Endoplasmic reticulum0.093

Rank 2 · LXL04_004615 · OH-1004

Lysosome / Vacuole0.087

Rank 3 · LXL04_004615 · OH-1004

Cell membrane0.078

Rank 4 · LXL04_004615 · OH-1004

Cytoplasm0.076

Rank 5 · LXL04_004615 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL42-351 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004615	`PF00657.29`	Lipase_GDSL	42	351	2.8e-30	106.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFC6`	Arabidopsis thaliana	GDSL esterase/lipase At5g22810	60.486%	Swiss-Prot	strong database homology
`Q9LZC5`	Arabidopsis thaliana	GDSL esterase/lipase At5g03820	54.830%	Swiss-Prot	strong database homology
`Q9FFN0`	Arabidopsis thaliana	GDSL esterase/lipase At5g03810	56.442%	Swiss-Prot	strong database homology
`Q0WPI9`	Arabidopsis thaliana	GDSL esterase/lipase At3g53100	54.769%	Swiss-Prot	strong database homology
`Q9LU14`	Arabidopsis thaliana	GDSL esterase/lipase APG	56.442%	Swiss-Prot	strong database homology

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