LXL04_004593 | RubberDandelionOmics

Gene overview

LXL04_004593

Reference: OH-1004 Chr: Chr01 Coordinates: 141156022-141156624 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

603 bp · LXL04_004593|LXL04_004593|OH1004|cDNA

ATGGCCACTAATAAACCTCCGACGTCAAATCAACCAGCACACTCCAAACTAGTGAGACTCATCGCTATAGTCTTGCTCGTACTCATAGTCCTTGTTGGTCTAACCATTCTCATCATCTGGCTAACCATAAAGCCTAAAAAGTTGGTTTATTCCATCGATGATGGTTCTATTCACAACTACAATTTATCCAATGGAAACCACCTAAACTCAACCTACTACTTTATGCTGCGTGCATATAATCCTAACAAGAAAGTGGCGAT...

CDS

Download CDS FASTA

603 bp · LXL04_004593|LXL04_004593|OH1004|CDS

ATGGCCACTAATAAACCTCCGACGTCAAATCAACCAGCACACTCCAAACTAGTGAGACTCATCGCTATAGTCTTGCTCGTACTCATAGTCCTTGTTGGTCTAACCATTCTCATCATCTGGCTAACCATAAAGCCTAAAAAGTTGGTTTATTCCATCGATGATGGTTCTATTCACAACTACAATTTATCCAATGGAAACCACCTAAACTCAACCTACTACTTTATGCTGCGTGCATATAATCCTAACAAGAAAGTGGCGAT...

Protein

Download Protein FASTA

200 aa · LXL04_004593|LXL04_004593|OH1004|PROTEIN

MATNKPPTSNQPAHSKLVRLIAIVLLVLIVLVGLTILIIWLTIKPKKLVYSIDDGSIHNYNLSNGNHLNSTYYFMLRAYNPNKKVAIYYDKVDVTVLYDDETLSRGIIDPFHQPKRNATRFKLNLASHDVPLHDQTARDLKAERSSGQVEMTVKLRAKIRFKVGVWKSRHYHMKVSCAPIMVHFSSSSKGFQRTICDVDI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004593`
TK1151 ID	TkA01G131840
OH-1004 ID	LXL04_004593
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004593

Location Chr01:141156022-141156624 (+)

Description Similar to At1g08160: Uncharacterized protein At1g08160

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08160`	Uncharacterized protein At1g08160.	No verified direct reference in this release
`At5g06320`	Confers resistance to Pseudomonas syringae pv. tomato DC3000 (Pst DC3000).	The Arabidopsis NHL3 gene encodes a plasma membrane protein and its overexpression correlates with increased resistance to Pseudomonas syringae pv. tomato DC3000.2003 · DOI: 10.1104/pp.103.020438
`At3g11650`	May play a role in plant immunity.	No verified direct reference in this release
`At2g35980`	May play a role in plant immunity.	No verified direct reference in this release
`At5g53730`	Involved in the regulation of sugar, amino acid and some primary metabolite export from companion cells (CCs) to sieve elements (SEs) in phloem.	Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111849

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004593 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051707 response to other organism Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0110126 phloem loading Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G08160

ath:AT2G35980

ath:AT3G11650

ath:AT5G06320

ath:AT5G53730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.680

Rank 1 · LXL04_004593 · OH-1004

Cytoplasm0.122

Rank 2 · LXL04_004593 · OH-1004

Extracellular0.106

Rank 3 · LXL04_004593 · OH-1004

Lysosome / Vacuole0.095

Rank 4 · LXL04_004593 · OH-1004

Endoplasmic reticulum0.093

Rank 5 · LXL04_004593 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03168.20LEA_276-177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004593	`PF03168.20`	LEA_2	76	177	2.9e-17	63.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZ13`	Arabidopsis thaliana	Uncharacterized protein At1g08160	33.939%	Swiss-Prot	moderate database homology
`Q9FNH6`	Arabidopsis thaliana	NDR1/HIN1-like protein 3	31.383%	Swiss-Prot	moderate database homology
`Q9SRN1`	Arabidopsis thaliana	NDR1/HIN1-like protein 2	28.571%	Swiss-Prot	weak database homology
`Q9SJ52`	Arabidopsis thaliana	NDR1/HIN1-like protein 10	30.675%	Swiss-Prot	moderate database homology
`Q9FI03`	Arabidopsis thaliana	NDR1/HIN1-like protein 26	31.579%	Swiss-Prot	moderate database homology

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