LXL04_004393 | RubberDandelionOmics

Gene overview

LXL04_004393

Reference: OH-1004 Chr: Chr01 Coordinates: 134448497-134456668 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6897 bp · LXL04_004393|LXL04_004393|OH1004|cDNA

ATGGAGACTGGAGCAACAATAGAAGATCAATTGTCGAAGGTACATCCATGTTTTCATACAAACACAAGGATTGGAATTATTGGGGCGGGCCCCAGTGGGTTATCGGCTGCATATGCACTATGCAAACTTGGGTACTCTAATGTCACTGTTTTGGAGAAACATTGGTCCGTAGGTGGCATGTGTGAATCTGTGGAAATTGAAGGGAGGATATACGACTTGGGAGGTCAAGTCCTAGCTGCAAATAGTGCTCCCACGATCTT...

CDS

Download CDS FASTA

6897 bp · LXL04_004393|LXL04_004393|OH1004|CDS

ATGGAGACTGGAGCAACAATAGAAGATCAATTGTCGAAGGTACATCCATGTTTTCATACAAACACAAGGATTGGAATTATTGGGGCGGGCCCCAGTGGGTTATCGGCTGCATATGCACTATGCAAACTTGGGTACTCTAATGTCACTGTTTTGGAGAAACATTGGTCCGTAGGTGGCATGTGTGAATCTGTGGAAATTGAAGGGAGGATATACGACTTGGGAGGTCAAGTCCTAGCTGCAAATAGTGCTCCCACGATCTT...

Protein

Download Protein FASTA

2298 aa · LXL04_004393|LXL04_004393|OH1004|PROTEIN

METGATIEDQLSKVHPCFHTNTRIGIIGAGPSGLSAAYALCKLGYSNVTVLEKHWSVGGMCESVEIEGRIYDLGGQVLAANSAPTIFHLANEIGAETEELDDHKFAIIDTKGKFTDIKVIEDYVSIVSLTLKLQDEANATGRIGVHAISDIASEPTPLFLRSNGLESVPKSVAYGFTASGYGFVQDMPYAYVHEFTRTSMAGKIRRFKSGYMSVWDKISKHLPAQIHCNTQVLTVNRNDNTIKIEANLFNGETQHMEFDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004393`
TK1151 ID	TkA01G159070
OH-1004 ID	LXL04_004393
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_004393`
Location	Chr01:134448497-134456668 (-)
Description	Similar to fadD26: Long-chain-fatty-acid--AMP ligase FadD26 (Mycobacterium marinum (strain ATCC BAA-535 / M)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004393` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006633 fatty acid biosynthetic process Biological Process GO:0008610 lipid biosynthetic process Biological Process GO:0097040 phthiocerol biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0005524 ATP binding Molecular Function GO:0016874 ligase activity Molecular Function GO:0016878 acid-thiol ligase activity Molecular Function GO:0070566 adenylyltransferase activity Molecular Function
KEGG gene cross-reference	ag:AAS98774 mbo:BQ2027_MB2955 mmi:MMAR_1777 mtc:MT2999 mtu:Rv2930 mtv:RVBD_2930 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.287

Rank 1 · LXL04_004393 · OH-1004

Mitochondrion0.246

Rank 2 · LXL04_004393 · OH-1004

Cytoplasm0.211

Rank 3 · LXL04_004393 · OH-1004

Cell membrane0.105

Rank 4 · LXL04_004393 · OH-1004

Nucleus0.101

Rank 5 · LXL04_004393 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13450.13NAD_binding_826-92 aa

PF01593.31Amino_oxidase32-279 aa

PF00501.35AMP-binding521-916 aa

PF23024.2AMP-dom_DIP2-like960-1084 aa

PF00550.32PP-binding1116-1180 aa

PF00199.25Catalase1734-2002 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004393	`PF13450.13`	NAD_binding_8	26	92	9.2e-15	55.4
LXL04_004393	`PF01593.31`	Amino_oxidase	32	279	7.5e-16	59.2
LXL04_004393	`PF00501.35`	AMP-binding	521	916	9.2e-52	176.8
LXL04_004393	`PF23024.2`	AMP-dom_DIP2-like	960	1084	2.5e-10	41.1
LXL04_004393	`PF00550.32`	PP-binding	1116	1180	2.8e-08	34.6
LXL04_004393	`PF00199.25`	Catalase	1734	2002	1.9e-08	34.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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