LXL04_004250 | RubberDandelionOmics

Gene overview

LXL04_004250

Reference: OH-1004 Chr: Chr01 Coordinates: 131133386-131135295 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1233 bp · LXL04_004250|LXL04_004250|OH1004|cDNA

ATGGGCATGTGTGTGGGAAAGCCTGCAAATGTTGCTCATGTTTCCTCTTCACAGTTCATGGATTACGCAAAGAGTCACCATGAAAGAAAACATCGATCAAAAACTATGACTTTCAAGAAAGTTTCAAAAGCATCTAGAGATGAGAATTGTCCGGTACCCATTAACCTCAAGGCCTTCACTTTCAACGATCTTAAGACCGCCACCAAGAACTTCCGGCCAGATAGTATCGTCGGAGAAGGAGGCTTTGGTCGTGTTTTCAA...

CDS

Download CDS FASTA

1233 bp · LXL04_004250|LXL04_004250|OH1004|CDS

ATGGGCATGTGTGTGGGAAAGCCTGCAAATGTTGCTCATGTTTCCTCTTCACAGTTCATGGATTACGCAAAGAGTCACCATGAAAGAAAACATCGATCAAAAACTATGACTTTCAAGAAAGTTTCAAAAGCATCTAGAGATGAGAATTGTCCGGTACCCATTAACCTCAAGGCCTTCACTTTCAACGATCTTAAGACCGCCACCAAGAACTTCCGGCCAGATAGTATCGTCGGAGAAGGAGGCTTTGGTCGTGTTTTCAA...

Protein

Download Protein FASTA

410 aa · LXL04_004250|LXL04_004250|OH1004|PROTEIN

MGMCVGKPANVAHVSSSQFMDYAKSHHERKHRSKTMTFKKVSKASRDENCPVPINLKAFTFNDLKTATKNFRPDSIVGEGGFGRVFKGWIDETTLDPAKPGTGQVIAVKVLKSESHQGHREWLTEVDYLGKLRHKNLVKLIGYCEECENRLLVYEFMPKGCLENHLFRKGVEPISWAIRMRIAIDVAEGLSFLHSNEPDHIIYRDLKAANILLDSEFTARLSDFGLARNGPVGDNTHVSTRVVGTSGYAAPEYVATGTNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004250`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004250

Location Chr01:131133386-131135295 (+)

Description Similar to PBL3: Probable serine/threonine-protein kinase PBL3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868
`At1g69790`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g26970`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004250 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G14370

ath:AT1G26970

ath:AT1G69790

ath:AT2G02800

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.717

Rank 1 · LXL04_004250 · OH-1004

Nucleus0.227

Rank 2 · LXL04_004250 · OH-1004

Cytoplasm0.223

Rank 3 · LXL04_004250 · OH-1004

Endoplasmic reticulum0.036

Rank 4 · LXL04_004250 · OH-1004

Golgi apparatus0.024

Rank 5 · LXL04_004250 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase74-358 aa

PF07714.24PK_Tyr_Ser-Thr75-360 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004250	`PF00069.32`	Pkinase	74	358	1.3e-44	153.3
LXL04_004250	`PF07714.24`	PK_Tyr_Ser-Thr	75	360	1.2e-45	156.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49840`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL3	63.284%	Swiss-Prot	strong database homology
`O49839`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL2	64.762%	Swiss-Prot	strong database homology
`Q5XF79`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL18	56.349%	Swiss-Prot	strong database homology
`Q5PP29`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL4	60.580%	Swiss-Prot	strong database homology
`Q65XV8`	Oryza sativa subsp. japonica	Receptor-like cytoplasmic kinase 176	61.783%	Swiss-Prot	strong database homology

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