LXL04_004175 | RubberDandelionOmics

Gene overview

LXL04_004175

Reference: OH-1004 Chr: Chr01 Coordinates: 127458715-127462582 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

822 bp · LXL04_004175|LXL04_004175|OH1004|cDNA

ATGGCGAATTCAATTTCATCTATCATCGTTCCGATCGACGATTCACGGAGTACAGTTCGCGATTTGAAGCCAGTCGGGCCGATTTTGAATTTGCCGACTGTTCGAGTTCTGCGTGCGGCTCAGTCTCGATTGCGACAACGACTCTTCGTTTTCATGATGCCTGGCGAGTCTGCCATCCCGACTTCAAACGCCCCTTTTCTTCCCTGGAAGGCGCTTGTGAAAGGTGACGTTTTCCTCCCTGTCACAGTGTCATTATTAAT...

CDS

Download CDS FASTA

822 bp · LXL04_004175|LXL04_004175|OH1004|CDS

ATGGCGAATTCAATTTCATCTATCATCGTTCCGATCGACGATTCACGGAGTACAGTTCGCGATTTGAAGCCAGTCGGGCCGATTTTGAATTTGCCGACTGTTCGAGTTCTGCGTGCGGCTCAGTCTCGATTGCGACAACGACTCTTCGTTTTCATGATGCCTGGCGAGTCTGCCATCCCGACTTCAAACGCCCCTTTTCTTCCCTGGAAGGCGCTTGTGAAAGGTGACGTTTTCCTCCCTGTCACAGTGTCATTATTAAT...

Protein

Download Protein FASTA

273 aa · LXL04_004175|LXL04_004175|OH1004|PROTEIN

MANSISSIIVPIDDSRSTVRDLKPVGPILNLPTVRVLRAAQSRLRQRLFVFMMPGESAIPTSNAPFLPWKALVKGDVFLPVTVSLLIKFSMYVYQQAPQPKHDEVEEDADDDEKPNSPKDNTEKTRRERGKHVNAYSAPNLEGILVLVFGIRMVKMMQTLELLLEEEVVRLEEQVVHFRQVDTDRTVKAFYKFLKQHAAIPFKLQKPESTQKPEPESTQKPKPTPESSNQDLKQQVSWLWGFSLEGIEGCNRTNYWTKPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004175`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004175

Location Chr01:127458715-127462582 (-)

Description Similar to PDIL1-4: Protein disulfide isomerase-like 1-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60640`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor.2011 · DOI: 10.1007/s10059-011-0150-3

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004175 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0003756 protein disulfide isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT5G60640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.314

Rank 1 · LXL04_004175 · OH-1004

Nucleus0.306

Rank 2 · LXL04_004175 · OH-1004

Mitochondrion0.301

Rank 3 · LXL04_004175 · OH-1004

Cell membrane0.110

Rank 4 · LXL04_004175 · OH-1004

Endoplasmic reticulum0.109

Rank 5 · LXL04_004175 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FF55`	Arabidopsis thaliana	Protein disulfide isomerase-like 1-4	48.485%	Swiss-Prot	weak database homology

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