Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1494 bp · LXL04_004077|LXL04_004077|OH1004|cDNA
ATGGAAGTTGTTGTCTGTGGATTTGCTTCACCATGGGAGATGGGTATGGGTTGGACAGGTTTCAATAGAGTTAAGCATGTGGTTGATCTATGTGCTGAACCAGATAAGAGAGTTAGTTTAGATGAACATGATGAAAACAACATGAAAATTGAACTAAACACTTTCAAGGATCTGTGTACAAAAGAATTGCAAGGAAGCATGCCATATCATATGCAAACCAACCGTACGATGAAATGCCAAACTGAAATTTCATCACGTCA...
1494 bp · LXL04_004077|LXL04_004077|OH1004|CDS
ATGGAAGTTGTTGTCTGTGGATTTGCTTCACCATGGGAGATGGGTATGGGTTGGACAGGTTTCAATAGAGTTAAGCATGTGGTTGATCTATGTGCTGAACCAGATAAGAGAGTTAGTTTAGATGAACATGATGAAAACAACATGAAAATTGAACTAAACACTTTCAAGGATCTGTGTACAAAAGAATTGCAAGGAAGCATGCCATATCATATGCAAACCAACCGTACGATGAAATGCCAAACTGAAATTTCATCACGTCA...
Protein
Download Protein FASTA497 aa · LXL04_004077|LXL04_004077|OH1004|PROTEIN
MEVVVCGFASPWEMGMGWTGFNRVKHVVDLCAEPDKRVSLDEHDENNMKIELNTFKDLCTKELQGSMPYHMQTNRTMKCQTEISSRQTLPGALQAPPRTDPSKYEARGSGQFLTSNEIKSGSTKKAANTVRLVICSPISDGGAGVVVKLTEWSIAIVMYGRLTWGIHNPPRLMDTFIRNYQNSWQTSITSSCSTSTSTSNSNSGSFLRSKPIECAICKDEFIKGENIKRLPCRHFFHHECIRRWLSYKKNCSICRRTIVK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004077 |
|---|---|
| TK1151 ID | TkA01G206070 |
| OH-1004 ID | LXL04_004077 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 27.565Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004077 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:124198579-124207624 (-) | |||||||||
| Description | Similar to At3g19950: E3 ubiquitin-protein ligase RING1-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0016567 protein ubiquitination Biological Process GO:0035519 protein K29-linked ubiquitination Biological Process GO:0044314 protein K27-linked ubiquitination Biological Process GO:1905168 positive regulation of double-strand break repair via homologous recombination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G19950 xla:432033 xtr:448402 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13639.13zf-RING_2213-255 aaPF13923.13zf-C3HC4_2213-254 aaPF17123.12zf-RING_11213-241 aaPF13920.13zf-C3HC4_3213-258 aaPF14634.13zf-RING_5213-256 aaPF13445.13zf-RING_UBOX214-249 aaPF00097.32zf-C3HC4214-254 aaPF12678.14zf-rbx1226-255 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004077 | PF13639.13 | zf-RING_2 | 213 | 255 | 6e-28 | 97.6 |
| LXL04_004077 | PF13923.13 | zf-C3HC4_2 | 213 | 254 | 2.3e-17 | 63.2 |
| LXL04_004077 | PF17123.12 | zf-RING_11 | 213 | 241 | 3.3e-17 | 62.6 |
| LXL04_004077 | PF13920.13 | zf-C3HC4_3 | 213 | 258 | 4.1e-11 | 43.2 |
| LXL04_004077 | PF14634.13 | zf-RING_5 | 213 | 256 | 2e-09 | 37.9 |
| LXL04_004077 | PF13445.13 | zf-RING_UBOX | 214 | 249 | 7.3e-13 | 49.0 |
| LXL04_004077 | PF00097.32 | zf-C3HC4 | 214 | 254 | 1.1e-12 | 48.3 |
| LXL04_004077 | PF12678.14 | zf-rbx1 | 226 | 255 | 2.7e-12 | 47.4 |
| LXL04_004077 | PF13920.13 | zf-C3HC4_3 | 396 | 442 | 4.1e-11 | 43.2 |
| LXL04_004077 | PF13639.13 | zf-RING_2 | 397 | 439 | 6e-28 | 97.6 |
| LXL04_004077 | PF13923.13 | zf-C3HC4_2 | 397 | 438 | 2.3e-17 | 63.2 |
| LXL04_004077 | PF17123.12 | zf-RING_11 | 397 | 425 | 3.3e-17 | 62.6 |
| LXL04_004077 | PF14634.13 | zf-RING_5 | 397 | 440 | 2e-09 | 37.9 |
| LXL04_004077 | PF13445.13 | zf-RING_UBOX | 398 | 436 | 7.3e-13 | 49.0 |
| LXL04_004077 | PF00097.32 | zf-C3HC4 | 398 | 438 | 1.1e-12 | 48.3 |
| LXL04_004077 | PF12678.14 | zf-rbx1 | 398 | 439 | 2.7e-12 | 47.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.