LXL04_004035 | RubberDandelionOmics

Gene overview

LXL04_004035

Reference: OH-1004 Chr: Chr01 Coordinates: 122730028-122733983 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2460 bp · LXL04_004035|LXL04_004035|OH1004|cDNA

ATGAGGCCGCCAAGGAGAAGAAACCAAAAGCGGCGCCCGTATATTTCAATTTCAGAGTTTCGGGACTTGGCAAATGCAGTCCCTCAAGTTCCTATCATTATTAGAACAAAAATcagaaatcggggtgttacattaAGAGCTGGACAAATGGCTGAACTagatgcaagaagaactgaaGTGTTGAGTAGAGCAGCACAAATTATTCAGAGGCGGATAATAACACATATTGCTCACAAACTATTTATAGAAATTCGCAAGTC...

CDS

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2460 bp · LXL04_004035|LXL04_004035|OH1004|CDS

ATGAGGCCGCCAAGGAGAAGAAACCAAAAGCGGCGCCCGTATATTTCAATTTCAGAGTTTCGGGACTTGGCAAATGCAGTCCCTCAAGTTCCTATCATTATTAGAACAAAAATCAGAAATCGGGGTGTTACATTAAGAGCTGGACAAATGGCTGAACTAGATGCAAGAAGAACTGAAGTGTTGAGTAGAGCAGCACAAATTATTCAGAGGCGGATAATAACACATATTGCTCACAAACTATTTATAGAAATTCGCAAGTC...

Protein

Download Protein FASTA

819 aa · LXL04_004035|LXL04_004035|OH1004|PROTEIN

MRPPRRRNQKRRPYISISEFRDLANAVPQVPIIIRTKIRNRGVTLRAGQMAELDARRTEVLSRAAQIIQRRIITHIAHKLFIEIRKSSVVIQSYFRSRLACKRFEELRRIGAAITLQTHVRSDRARVAYSKLRVAVLEVQTVIRGQKARKEFIFKKRTPQLKSRAVKFYKELNRGAIVTQCRWRGKLAKRELRKLKMAARETGALKEAKDKLEKQLEELMWRIQLEKRLRTDLEEAKASEAQKFQNALEALQKKLDEANA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004035`
TK1151 ID	TkA01G210250
OH-1004 ID	LXL04_004035
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	68.500
Protein coverage (%)	TK1151 84.581 / OH-1004 95.604 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004035

Location Chr01:122730028-122733983 (-)

Description Similar to XI-E: Myosin-11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54560`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g08730`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At5g20490`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g17580`	Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.	Enzymatic activity and motility of recombinant Arabidopsis myosin XI, MYA1.2007 · DOI: 10.1093/pcp/pcm054 A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.2009 · DOI: 10.1104/pp.109.136853 Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.2012 · DOI: 10.1093/jxb/err265
`At5g43900`	Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.	Peroxisomal localization of a myosin XI isoform in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci085 Two class XI myosins function in organelle trafficking and root hair development in Arabidopsis.2008 · DOI: 10.1104/pp.107.113654 A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.2009 · DOI: 10.1104/pp.109.136853 Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.2012 · DOI: 10.1093/jxb/err265

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004035 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010091 trichome branching Biological Process

GO:0010154 fruit development Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048767 root hair elongation Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0051301 cell division Biological Process

KEGG gene cross-reference

ath:AT1G08730

ath:AT1G17580

ath:AT1G54560

ath:AT5G20490

ath:AT5G43900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.397

Rank 1 · LXL04_004035 · OH-1004

Cell membrane0.249

Rank 2 · LXL04_004035 · OH-1004

Golgi apparatus0.212

Rank 3 · LXL04_004035 · OH-1004

Nucleus0.165

Rank 4 · LXL04_004035 · OH-1004

Endoplasmic reticulum0.122

Rank 5 · LXL04_004035 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01843.26DIL693-797 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004035	`PF01843.26`	DIL	693	797	9.6e-30	103.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HWY6`	Arabidopsis thaliana	Myosin-11	66.752%	Swiss-Prot	strong database homology
`F4HXP9`	Arabidopsis thaliana	Myosin-9	65.517%	Swiss-Prot	strong database homology
`F4K5J1`	Arabidopsis thaliana	Myosin-17	58.302%	Swiss-Prot	strong database homology
`Q39160`	Arabidopsis thaliana	Myosin-5	51.276%	Swiss-Prot	strong database homology
`Q9LKB9`	Arabidopsis thaliana	Myosin-6	46.419%	Swiss-Prot	moderate database homology

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