LXL04_003855 | RubberDandelionOmics

Gene overview

LXL04_003855

Reference: OH-1004 Chr: Chr01 Coordinates: 109624747-109627735 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

960 bp · LXL04_003855|LXL04_003855|OH1004|cDNA

ATGAAGGAGTTAGGTGCATATATGTGCATTTGTCAAATGTGTATATAcatagatgttggttcaaatgctCTAGCTAGTAATAAATTCCACTTGTACATTTCACTTGTTTCTTTAGTGGAGATTATCCTAATTCCTATCATCATTATCTCAACTATAAATATCCTTTTGTGTGAAAAAACAAAACTAAGCATGAGTTTAATACCATGCAACTATTTCACTCTTGGTGTTTTTATTGGGATTTTTCTTATGCCGTCATCTTG...

CDS

Download CDS FASTA

960 bp · LXL04_003855|LXL04_003855|OH1004|CDS

ATGAAGGAGTTAGGTGCATATATGTGCATTTGTCAAATGTGTATATACATAGATGTTGGTTCAAATGCTCTAGCTAGTAATAAATTCCACTTGTACATTTCACTTGTTTCTTTAGTGGAGATTATCCTAATTCCTATCATCATTATCTCAACTATAAATATCCTTTTGTGTGAAAAAACAAAACTAAGCATGAGTTTAATACCATGCAACTATTTCACTCTTGGTGTTTTTATTGGGATTTTTCTTATGCCGTCATCTTG...

Protein

Download Protein FASTA

319 aa · LXL04_003855|LXL04_003855|OH1004|PROTEIN

MKELGAYMCICQMCIYIDVGSNALASNKFHLYISLVSLVEIILIPIIIISTINILLCEKTKLSMSLIPCNYFTLGVFIGIFLMPSSCFSQEYYVSSRATYYGSPDCLGTPTGACGYKVYGSTINSGDVSGVSRLFKNGTGCGACYQVRCKSPKHCSAEGVKVVVTDHGEGDNTDFILSIHAYNKLALPGLAEELFSYGVVDVEYKRISCQYSGYNLMLKVHEHSKFPEYLSLIAIYQAGVSEITAVEIWQEDCQQWMCMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003855`
TK1151 ID	TkA01G255010
OH-1004 ID	LXL04_003855
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 80.251 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003855

Location Chr01:109624747-109627735 (-)

Description Similar to EXLB1: Expansin-like B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17030`	Expansin-like B1.	No verified direct reference in this release
`At3g45960`	Expansin-like A3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0496250`	Expansin-like B1.	No verified direct reference in this release
`Os03g0132200`	Expansin-like A1.	No verified direct reference in this release
`Os10g0542400`	Expansin-like A2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003855 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009653 anatomical structure morphogenesis Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G45960

ath:AT4G17030

dosa:Os03g0132200

dosa:Os10g0542400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.313

Rank 1 · LXL04_003855 · OH-1004

Extracellular0.192

Rank 2 · LXL04_003855 · OH-1004

Cytoplasm0.179

Rank 3 · LXL04_003855 · OH-1004

Endoplasmic reticulum0.164

Rank 4 · LXL04_003855 · OH-1004

Cell membrane0.120

Rank 5 · LXL04_003855 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03330.25DPBB_1129-204 aa

PF01357.28Expansin_C218-303 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003855	`PF03330.25`	DPBB_1	129	204	1.2e-13	51.8
LXL04_003855	`PF01357.28`	Expansin_C	218	303	5.6e-17	62.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23547`	Arabidopsis thaliana	Expansin-like B1	57.083%	Swiss-Prot	strong database homology
`Q9LZT5`	Arabidopsis thaliana	Expansin-like A3	38.542%	Swiss-Prot	moderate database homology
`Q850K7`	Oryza sativa subsp. japonica	Expansin-like B1	39.357%	Swiss-Prot	moderate database homology
`Q10S70`	Oryza sativa subsp. japonica	Expansin-like A1	39.381%	Swiss-Prot	moderate database homology
`Q7XCL0`	Oryza sativa subsp. japonica	Expansin-like A2	40.566%	Swiss-Prot	moderate database homology

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