LXL04_003711 | RubberDandelionOmics

Gene overview

LXL04_003711

Reference: OH-1004 Chr: Chr01 Coordinates: 96662018-96665750 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1305 bp · LXL04_003711|LXL04_003711|OH1004|cDNA

ATGGCGAATAAGTCTTTCAAGTACGTGATCGTCGGCGGGGGTGTCTCAGCTGGTTATGCTGCCAGGGAGTTTGCAAAGCAAGGAGTACAACCAGGCGAGCTAGCCATCATTTCAAAAGAGGGGGTTGCTCCATATGAACGTCCTGCACTAAGCAAGGCTTATTTGTTTCCAGAAGGAGCTGCCAGACTTCCAGGTTTTCATACATGTGTTGGAAGTGGAGGAGAGAGACTACTCCCAGAGTGGTACACAGAGAAAGGGAT...

CDS

Download CDS FASTA

1305 bp · LXL04_003711|LXL04_003711|OH1004|CDS

ATGGCGAATAAGTCTTTCAAGTACGTGATCGTCGGCGGGGGTGTCTCAGCTGGTTATGCTGCCAGGGAGTTTGCAAAGCAAGGAGTACAACCAGGCGAGCTAGCCATCATTTCAAAAGAGGGGGTTGCTCCATATGAACGTCCTGCACTAAGCAAGGCTTATTTGTTTCCAGAAGGAGCTGCCAGACTTCCAGGTTTTCATACATGTGTTGGAAGTGGAGGAGAGAGACTACTCCCAGAGTGGTACACAGAGAAAGGGAT...

Protein

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434 aa · LXL04_003711|LXL04_003711|OH1004|PROTEIN

MANKSFKYVIVGGGVSAGYAAREFAKQGVQPGELAIISKEGVAPYERPALSKAYLFPEGAARLPGFHTCVGSGGERLLPEWYTEKGINLILNTEIVKADLASKTLTSAAGETFTYKFLIIATGSTTLKLTDFGVEGASAKNILYLRDIDDADKLVEAIKAKKNGTAVVVGGGYIGLELSAVLKINNFDVKMVYPEPWCMPRLFTAGIAAFYEGYYEKKGVSIIKGTVASGFTSNDNGEVKEVKLKDGRVLEADIVVVGVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003711`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003711

Location Chr01:96662018-96665750 (-)

Description Similar to AFRR: Monodehydroascorbate reductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52880`	Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.	Arabidopsis peroxisomes possess functionally redundant membrane and matrix isoforms of monodehydroascorbate reductase.2005 · DOI: 10.1111/j.1365-313x.2005.02503.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0557600`	Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.	No verified direct reference in this release
`Os09g0567300`	Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003711 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0098869 cellular oxidant detoxification Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005782 peroxisomal matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0016656 monodehydroascorbate reductase (NADH) activity Molecular Function

KEGG gene cross-reference

ath:AT3G52880

dosa:Os08g0557600

dosa:Os09g0567300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.723

Rank 1 · LXL04_003711 · OH-1004

Nucleus0.250

Rank 2 · LXL04_003711 · OH-1004

Mitochondrion0.139

Rank 3 · LXL04_003711 · OH-1004

Peroxisome0.098

Rank 4 · LXL04_003711 · OH-1004

Plastid0.066

Rank 5 · LXL04_003711 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992.21Pyr_redox_26-320 aa

PF00070.34Pyr_redox166-247 aa

PF04820.21Trp_halogenase206-264 aa

PF21791.4MDHAR3-like_C344-431 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003711	`PF07992.21`	Pyr_redox_2	6	320	7.2e-58	197.0
LXL04_003711	`PF00070.34`	Pyr_redox	166	247	9.7e-17	62.0
LXL04_003711	`PF04820.21`	Trp_halogenase	206	264	3e-06	27.1
LXL04_003711	`PF21791.4`	MDHAR3-like_C	344	431	2.8e-42	143.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFA3`	Arabidopsis thaliana	Monodehydroascorbate reductase 1, peroxisomal	78.111%	Swiss-Prot	strong database homology
`Q6ZJ08`	Oryza sativa subsp. japonica	Monodehydroascorbate reductase 4, cytosolic	77.598%	Swiss-Prot	strong database homology
`Q652L6`	Oryza sativa subsp. japonica	Monodehydroascorbate reductase 3, cytosolic	77.367%	Swiss-Prot	strong database homology

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