LXL04_003487 | RubberDandelionOmics

Gene overview

LXL04_003487

Reference: OH-1004 Chr: Chr01 Coordinates: 80950605-80952026 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

459 bp · LXL04_003487|LXL04_003487|OH1004|cDNA

ATGAGGAATTTCGCCGGGACACCTGGAACAGTGACTGCTCTGATTTTGAGATTGTTGCAGTGCCTGTTTGCTGCTGCTTCAGTTGCTTCAATGGCTACCACTAAATCCTTCTTCAATTTTACTGCCTTCAGTTACTTGATAGCTTCAATGGGGTTGCAAGTAATCTGGAGCTTTGGACTTGCATTTCTGGATGCATGCGCCTTGGCAAACAAGAAAGTCCTCCACAATCCCGGTCTTCTCAGCCTCTTTGTTGTCGGAGA...

CDS

Download CDS FASTA

459 bp · LXL04_003487|LXL04_003487|OH1004|CDS

ATGAGGAATTTCGCCGGGACACCTGGAACAGTGACTGCTCTGATTTTGAGATTGTTGCAGTGCCTGTTTGCTGCTGCTTCAGTTGCTTCAATGGCTACCACTAAATCCTTCTTCAATTTTACTGCCTTCAGTTACTTGATAGCTTCAATGGGGTTGCAAGTAATCTGGAGCTTTGGACTTGCATTTCTGGATGCATGCGCCTTGGCAAACAAGAAAGTCCTCCACAATCCCGGTCTTCTCAGCCTCTTTGTTGTCGGAGA...

Protein

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152 aa · LXL04_003487|LXL04_003487|OH1004|PROTEIN

MRNFAGTPGTVTALILRLLQCLFAAASVASMATTKSFFNFTAFSYLIASMGLQVIWSFGLAFLDACALANKKVLHNPGLLSLFVVGDWVTATLSLAAASSSAGITVLYFSDLGGCGFGQECQKYQLAVALAFMSWISIGISSLIMLWTLAGC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003487`
TK1151 ID	TkA01G354420
OH-1004 ID	LXL04_003487
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003487

Location Chr01:80950605-80952026 (+)

Description Similar to At3g23200: CASP-like protein 5B3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g23200`	CASP-like protein 5B3.	No verified direct reference in this release
`At3g53850`	CASP-like protein 5B2.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0249400`	CASP-like protein 5B3.	No verified direct reference in this release
`UniProt: B8BD96`	CASP-like protein 5B3.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003487 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G23200

ath:AT3G53850

dosa:Os09g0249400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.807

Rank 1 · LXL04_003487 · OH-1004

Cytoplasm0.084

Rank 2 · LXL04_003487 · OH-1004

Endoplasmic reticulum0.074

Rank 3 · LXL04_003487 · OH-1004

Lysosome / Vacuole0.071

Rank 4 · LXL04_003487 · OH-1004

Nucleus0.035

Rank 5 · LXL04_003487 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04535.18CASP_dom7-136 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003487	`PF04535.18`	CASP_dom	7	136	1.3e-25	90.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7R5`	Arabidopsis thaliana	CASP-like protein 5B3	68.000%	Swiss-Prot	strong database homology
`Q945M8`	Arabidopsis thaliana	CASP-like protein 5B2	57.237%	Swiss-Prot	strong database homology
`Q6K478`	Oryza sativa subsp. japonica	CASP-like protein 5B3	54.605%	Swiss-Prot	strong database homology
`B8BD96`	Oryza sativa subsp. indica	CASP-like protein 5B3	54.605%	Swiss-Prot	strong database homology

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