LXL04_003293 | RubberDandelionOmics

Gene overview

LXL04_003293

Reference: OH-1004 Chr: Chr01 Coordinates: 73898798-73899908 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

870 bp · LXL04_003293|LXL04_003293|OH1004|cDNA

ATGGAAATACAAATAGACCGATTTACAACCGCCATTTTAGAAGAGGCCAAGAAGCTCGCATCGTGTTCCTCTGAAGATAACACCAATTGGGGAAAACAGATTGGTTACTCATATGATTCTTTGCTAGAGAGCAGTTTCACAGGATATTTGTTGCATGCAAGAGGTTGGAAATCCGTGTATCTATATCCGAACAGACCATCTTTCTTGGGTTGCACCACCATCGACATGAAAGACGCCATGGTTCAACTCATGAAATGGTC...

CDS

Download CDS FASTA

870 bp · LXL04_003293|LXL04_003293|OH1004|CDS

ATGGAAATACAAATAGACCGATTTACAACCGCCATTTTAGAAGAGGCCAAGAAGCTCGCATCGTGTTCCTCTGAAGATAACACCAATTGGGGAAAACAGATTGGTTACTCATATGATTCTTTGCTAGAGAGCAGTTTCACAGGATATTTGTTGCATGCAAGAGGTTGGAAATCCGTGTATCTATATCCGAACAGACCATCTTTCTTGGGTTGCACCACCATCGACATGAAAGACGCCATGGTTCAACTCATGAAATGGTC...

Protein

Download Protein FASTA

289 aa · LXL04_003293|LXL04_003293|OH1004|PROTEIN

MEIQIDRFTTAILEEAKKLASCSSEDNTNWGKQIGYSYDSLLESSFTGYLLHARGWKSVYLYPNRPSFLGCTTIDMKDAMVQLMKWSSGLLQIGLSRFNPLVYGASRMPILQSMCYAYFMYFPLLSIAFLASSPWFKVFAIVYMSSQLEHLYIVLSNDGSLVTWWNEQRIYLIRCISALLFGCVNVVMVSHGVAKANFRLTNKVVDKKKLEKYKKGTFDFEGAEMFMIPLTIMVVLNALCFVGGITRVIRNGNVGEMFGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003293`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003293

Location Chr01:73898798-73899908 (-)

Description Similar to CSLG2: Cellulose synthase-like protein G2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24000`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g23990`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g24010`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0725300`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003293 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0016104 triterpenoid biosynthetic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

KEGG gene cross-reference

ath:AT4G23990

ath:AT4G24000

ath:AT4G24010

dosa:Os02g0725300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.584

Rank 1 · LXL04_003293 · OH-1004

Cell membrane0.174

Rank 2 · LXL04_003293 · OH-1004

Golgi apparatus0.137

Rank 3 · LXL04_003293 · OH-1004

Cytoplasm0.061

Rank 4 · LXL04_003293 · OH-1004

Nucleus0.049

Rank 5 · LXL04_003293 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03552.21Cellulose_synt8-281 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003293	`PF03552.21`	Cellulose_synt	8	281	8.4e-41	141.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VYR4`	Arabidopsis thaliana	Cellulose synthase-like protein G2	30.709%	Swiss-Prot	moderate database homology
`Q0WVN5`	Arabidopsis thaliana	Cellulose synthase-like protein G3	32.157%	Swiss-Prot	moderate database homology
`Q570S7`	Arabidopsis thaliana	Cellulose synthase-like protein G1	28.125%	Swiss-Prot	weak database homology
`Q0DXZ1`	Oryza sativa subsp. japonica	Cellulose synthase-like protein E2	33.101%	Swiss-Prot	moderate database homology

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