LXL04_003084 | RubberDandelionOmics

Gene overview

LXL04_003084

Reference: OH-1004 Chr: Chr01 Coordinates: 66921183-66923389 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_003084|LXL04_003084|OH1004|cDNA

ATGAGGGGTAGATCATCTTCAAAGCAAGGGAAGATCAATCGAGTAGGGGTATCAATGGAAAAAGACAAAGTTGATAAGGTTAAAGAGGAGCCTCATCTCTCCGGTGCTTACATACGTAGCCTTGTCAAACACCTGACCTCTACAAAACCCAAAGATCCCTTCGATGCCGGAATTGTAAATACTAATGGCGAAAATCATCACAATATGAAACAAGaatcaccaccaccaccacaacaaccacaaccaccaccaccaccacc...

CDS

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1107 bp · LXL04_003084|LXL04_003084|OH1004|CDS

ATGAGGGGTAGATCATCTTCAAAGCAAGGGAAGATCAATCGAGTAGGGGTATCAATGGAAAAAGACAAAGTTGATAAGGTTAAAGAGGAGCCTCATCTCTCCGGTGCTTACATACGTAGCCTTGTCAAACACCTGACCTCTACAAAACCCAAAGATCCCTTCGATGCCGGAATTGTAAATACTAATGGCGAAAATCATCACAATATGAAACAAGAATCACCACCACCACCACAACAACCACAACCACCACCACCACCACC...

Protein

Download Protein FASTA

368 aa · LXL04_003084|LXL04_003084|OH1004|PROTEIN

MRGRSSSKQGKINRVGVSMEKDKVDKVKEEPHLSGAYIRSLVKHLTSTKPKDPFDAGIVNTNGENHHNMKQESPPPPQQPQPPPPPPQIKKQVRRRQHTSRPYQERLLNMAEARREIVTALKFHRASMKQQEAATATATAATTTTATTSSVPHYWAVPTIPPPPLPPLYYENLNFPLPNQTIGLNLNFQDFQNIDANLYQHPLSAYPSSSSSSSSSSFSSSSASSSSSSTSSTAAISAGETSASMPEEVVAGGLHHAMDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003084`
TK1151 ID	TkA01G396140
OH-1004 ID	LXL04_003084
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.200
Protein coverage (%)	TK1151 99.686 / OH-1004 90.489 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003084

Location Chr01:66921183-66923389 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g21280`	Required to regulate responses to abiotic stress (drought) and to oxidative stress leading to cell death.	Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes.2012 · DOI: 10.1016/j.plaphy.2012.05.024 A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.2020 · DOI: 10.1007/s00018-019-03202-5

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003084 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010555 response to mannitol Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:1901562 response to paraquat Biological Process

GO:1902882 regulation of response to oxidative stress Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · LXL04_003084 · OH-1004

Cytoplasm0.096

Rank 2 · LXL04_003084 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_003084 · OH-1004

Endoplasmic reticulum0.023

Rank 4 · LXL04_003084 · OH-1004

Plastid0.013

Rank 5 · LXL04_003084 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30938.1ATR728-368 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003084	`PF30938.1`	ATR7	28	368	7.2e-120	401.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C589`	Arabidopsis thaliana	Protein AAL-toxin resistant 7	35.674%	Swiss-Prot	moderate database homology

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