LXL04_003076 | RubberDandelionOmics

Gene overview

LXL04_003076

Reference: OH-1004 Chr: Chr01 Coordinates: 66724174-66727696 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1296 bp · LXL04_003076|LXL04_003076|OH1004|cDNA

ATGCATATGGATCCAATACTTCAACTGTTAAAGAAGGAAGAAGCTTCTTTATATATGTTCCTTTGGGAAGCTTGGCAAAATTTGACACTTATTATCTTGATAGTAGCTGCTGCTGCATCACTGGTTCCTGCTGATGATCTTCTAATAAAGGGTCACTCTCTAGCCATTGATGAATCTAGCATGACGGGAGAAAGCAAGATTGCACACAAGGATCAAAAATCACATTTTTTAATGTATGGATGCAAAGTAGCAGATGGTGC...

CDS

Download CDS FASTA

1296 bp · LXL04_003076|LXL04_003076|OH1004|CDS

ATGCATATGGATCCAATACTTCAACTGTTAAAGAAGGAAGAAGCTTCTTTATATATGTTCCTTTGGGAAGCTTGGCAAAATTTGACACTTATTATCTTGATAGTAGCTGCTGCTGCATCACTGGTTCCTGCTGATGATCTTCTAATAAAGGGTCACTCTCTAGCCATTGATGAATCTAGCATGACGGGAGAAAGCAAGATTGCACACAAGGATCAAAAATCACATTTTTTAATGTATGGATGCAAAGTAGCAGATGGTGC...

Protein

Download Protein FASTA

431 aa · LXL04_003076|LXL04_003076|OH1004|PROTEIN

MHMDPILQLLKKEEASLYMFLWEAWQNLTLIILIVAAAASLVPADDLLIKGHSLAIDESSMTGESKIAHKDQKSHFLMYGCKVADGAGTMMVTGVGINIEWGLLMASISDTGEETLLQFIVIYDHYVPWNLHEPKEGQLDFNGIADIVSFIELCQKLDLLVMLRAGPYICAEWDFGGFPAWLLTKEPSIRLRSSDPVYFTLVDKWWGTLLPKIALLLYHKGGPIVMLQIENEFGSYGVDKDYLHHLVNLARSHLGDDLIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003076`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003076

Location Chr01:66724174-66727696 (-)

Description Similar to BGAL17: Beta-galactosidase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72990`	Beta-galactosidase 17.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0539400`	Beta-galactosidase 8.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003076 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006689 ganglioside catabolic process Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0042340 keratan sulfate proteoglycan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005764 lysosome Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G72990

bta:507188

dosa:Os05g0539400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.294

Rank 1 · LXL04_003076 · OH-1004

Endoplasmic reticulum0.275

Rank 2 · LXL04_003076 · OH-1004

Lysosome / Vacuole0.183

Rank 3 · LXL04_003076 · OH-1004

Cytoplasm0.169

Rank 4 · LXL04_003076 · OH-1004

Nucleus0.084

Rank 5 · LXL04_003076 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00122.26E1-E2_ATPase36-105 aa

PF01301.26Glyco_hydro_35124-261 aa

PF01301.26Glyco_hydro_35273-348 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003076	`PF00122.26`	E1-E2_ATPase	36	105	2e-08	34.6
LXL04_003076	`PF01301.26`	Glyco_hydro_35	124	261	2.5e-72	244.9
LXL04_003076	`PF01301.26`	Glyco_hydro_35	273	348	2.5e-72	244.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93Z24`	Arabidopsis thaliana	Beta-galactosidase 17	66.912%	Swiss-Prot	weak database homology
`Q0DGD7`	Oryza sativa subsp. japonica	Beta-galactosidase 8	66.176%	Swiss-Prot	weak database homology

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