LXL04_003031 | RubberDandelionOmics

Gene overview

LXL04_003031

Reference: OH-1004 Chr: Chr01 Coordinates: 65360438-65364045 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1278 bp · LXL04_003031|LXL04_003031|OH1004|cDNA

ATGGGTACTTGTTTCAGTTCCGAGGATGACGAACACCATTCTTTCCAAAACAACCCAGGGGAAAACCAACGGTTTCCATCTAAAGAATCATTGAAGATTCCACCAAAACAAAGTATTTTGGAATCGCCTACAATAATAAAAAGTCCTAGCAATGTGGTGGTGATCACCAAAGATGTGAAAGATCTTAGACAAAATCCAGGATACAGCAATCTTGATATTTTCACATATGATGAGATGCGAATGGCCACCAAACTATTTAG...

CDS

Download CDS FASTA

1278 bp · LXL04_003031|LXL04_003031|OH1004|CDS

ATGGGTACTTGTTTCAGTTCCGAGGATGACGAACACCATTCTTTCCAAAACAACCCAGGGGAAAACCAACGGTTTCCATCTAAAGAATCATTGAAGATTCCACCAAAACAAAGTATTTTGGAATCGCCTACAATAATAAAAAGTCCTAGCAATGTGGTGGTGATCACCAAAGATGTGAAAGATCTTAGACAAAATCCAGGATACAGCAATCTTGATATTTTCACATATGATGAGATGCGAATGGCCACCAAACTATTTAG...

Protein

Download Protein FASTA

425 aa · LXL04_003031|LXL04_003031|OH1004|PROTEIN

MGTCFSSEDDEHHSFQNNPGENQRFPSKESLKIPPKQSILESPTIIKSPSNVVVITKDVKDLRQNPGYSNLDIFTYDEMRMATKLFRPDQVLGEGGFGVVYKGLIDDNVRTGYAKTQVAVKELDPEGIQGDREWLAEVNYLGQLQHPNLVKLIGYCCEEDHRLLVYEYMASGSLEKHLFRRVCATLTWSRRMKIALDAAKGLAFLHDAERPIIYRDFKTSNILLDAEFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003031`
TK1151 ID	TkA01G402820
OH-1004 ID	LXL04_003031
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_003031

Location Chr01:65360438-65364045 (+)

Description Similar to PBL17: Probable serine/threonine-protein kinase PBL17

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g07180`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g01020`	May be involved in plant defense signaling.	No verified direct reference in this release
`At2g05940`	Serine/threonine-protein kinase involved in disease resistance.	xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 Pseudomonas syringae Effector AvrPphB Suppresses AvrB-Induced Activation of RPM1 but Not AvrRpm1-Induced Activation.2015 · DOI: 10.1094/mpmi-08-14-0248-r

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003031 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0012501 programmed cell death Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1903428 positive regulation of reactive oxygen species biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT2G05940

ath:AT2G07180

ath:AT5G01020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.683

Rank 1 · LXL04_003031 · OH-1004

Cytoplasm0.246

Rank 2 · LXL04_003031 · OH-1004

Nucleus0.237

Rank 3 · LXL04_003031 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_003031 · OH-1004

Golgi apparatus0.026

Rank 5 · LXL04_003031 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr89-363 aa

PF00069.32Pkinase89-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003031	`PF07714.24`	PK_Tyr_Ser-Thr	89	363	1.3e-47	163.0
LXL04_003031	`PF00069.32`	Pkinase	89	361	1.5e-45	156.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1E3`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL17	67.830%	Swiss-Prot	strong database homology
`Q8GXZ3`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL8	70.684%	Swiss-Prot	strong database homology
`Q9ZUF4`	Arabidopsis thaliana	Serine/threonine-protein kinase RIPK	65.584%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card