LXL04_002926 | RubberDandelionOmics

Gene overview

LXL04_002926

Reference: OH-1004 Chr: Chr01 Coordinates: 61373259-61373947 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

507 bp · LXL04_002926|LXL04_002926|OH1004|cDNA

ATGAATAATAGTGATCAACAGGGGCCTCTAAACTTGATGAAAAGGCGGTGGTTGCAGGATCACCAGAAAAGACTCATGTCCCAACCCTACATCAACAAGCTCGTTTCTCAAAACAACAACATTTCTTCTTCTCCCCCCATTCATAAATTTCTAAAAGAGGAGGACGATTTAATAGCCAGAGTTATTCCAGCGGTGACGGTTGTGGTGGAAGACCGGTCAATCTGCCACCGGATCAGCCTTCAGAATCACGATGGTTACAA...

CDS

Download CDS FASTA

507 bp · LXL04_002926|LXL04_002926|OH1004|CDS

ATGAATAATAGTGATCAACAGGGGCCTCTAAACTTGATGAAAAGGCGGTGGTTGCAGGATCACCAGAAAAGACTCATGTCCCAACCCTACATCAACAAGCTCGTTTCTCAAAACAACAACATTTCTTCTTCTCCCCCCATTCATAAATTTCTAAAAGAGGAGGACGATTTAATAGCCAGAGTTATTCCAGCGGTGACGGTTGTGGTGGAAGACCGGTCAATCTGCCACCGGATCAGCCTTCAGAATCACGATGGTTACAA...

Protein

Download Protein FASTA

168 aa · LXL04_002926|LXL04_002926|OH1004|PROTEIN

MNNSDQQGPLNLMKRRWLQDHQKRLMSQPYINKLVSQNNNISSSPPIHKFLKEEDDLIARVIPAVTVVVEDRSICHRISLQNHDGYNSLAKALRHMLVDDDHNTATHAHDQEREVGVDLSNAVPGHIIAYEDMENDLLLAGDLNWKDFIRVAKRLRIIPVKANLSKAK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002926`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002926

Location Chr01:61373259-61373947 (-)

Description Similar to IAA33: Auxin-responsive protein IAA33

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57420`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At4g28640`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0178500`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os02g0805100`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os02g0723400`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002926 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009630 gravitropism Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT4G28640

ath:AT5G57420

dosa:Os01g0178500

dosa:Os02g0723400

dosa:Os02g0805100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.622

Rank 1 · LXL04_002926 · OH-1004

Cytoplasm0.368

Rank 2 · LXL04_002926 · OH-1004

Cell membrane0.122

Rank 3 · LXL04_002926 · OH-1004

Endoplasmic reticulum0.047

Rank 4 · LXL04_002926 · OH-1004

Lysosome / Vacuole0.023

Rank 5 · LXL04_002926 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309.23AUX_IAA60-158 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002926	`PF02309.23`	AUX_IAA	60	158	8e-13	49.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKM7`	Arabidopsis thaliana	Auxin-responsive protein IAA33	50.898%	Swiss-Prot	strong database homology
`Q38829`	Arabidopsis thaliana	Auxin-responsive protein IAA11	32.381%	Swiss-Prot	moderate database homology
`Q5VRD1`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA1	31.579%	Swiss-Prot	moderate database homology
`Q6K846`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA9	32.979%	Swiss-Prot	moderate database homology
`Q6Z5M0`	Oryza sativa subsp. japonica	Auxin-responsive protein IAA8	37.634%	Swiss-Prot	moderate database homology

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