LXL04_002831 | RubberDandelionOmics

Gene overview

LXL04_002831

Reference: OH-1004 Chr: Chr01 Coordinates: 59202540-59206315 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1305 bp · LXL04_002831|LXL04_002831|OH1004|cDNA

ATGAAGATAACAGTGAAAGAATCATCAATGGTGAAACCCTCGGAAACGACGCCGGATATGCGTATATGGAACTCAAATCTTGATTTGGTTGTGGGTCGGATCCATATTTTAACTCTGTACTTCTATAGACCAAATGGGTCGTCCAACTTCTTTAATTCTCAGGTTCTAAAGAAATCACTCGCCGACGTTCTGGTTTCTTTTTTTCCGATGGCCGGACGGTTGGGTAAGGACGGTGATGGCAGAGTTAATATAAACTGCAA...

CDS

Download CDS FASTA

1305 bp · LXL04_002831|LXL04_002831|OH1004|CDS

ATGAAGATAACAGTGAAAGAATCATCAATGGTGAAACCCTCGGAAACGACGCCGGATATGCGTATATGGAACTCAAATCTTGATTTGGTTGTGGGTCGGATCCATATTTTAACTCTGTACTTCTATAGACCAAATGGGTCGTCCAACTTCTTTAATTCTCAGGTTCTAAAGAAATCACTCGCCGACGTTCTGGTTTCTTTTTTTCCGATGGCCGGACGGTTGGGTAAGGACGGTGATGGCAGAGTTAATATAAACTGCAA...

Protein

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434 aa · LXL04_002831|LXL04_002831|OH1004|PROTEIN

MKITVKESSMVKPSETTPDMRIWNSNLDLVVGRIHILTLYFYRPNGSSNFFNSQVLKKSLADVLVSFFPMAGRLGKDGDGRVNINCNGEGALFVEAEADCHIDDFGQITPSPELRRLAPEVDYSGDISSYPLFVTQVTHFKCGGISFGCGLHHTLSDGLSSLHFINTWSDVTRGLSVAIPPFLDRTILHARDPPTPMFDHVEYHTPPSMIASPNNKIVEPTPDTISTSMLRLTLDQINTIKANGKGDGSVYHSTYEILAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002831`
TK1151 ID	TkA01G417950
OH-1004 ID	LXL04_002831
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 54.839 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002831

Location Chr01:59202540-59206315 (-)

Description Similar to HST: Shikimate O-hydroxycinnamoyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48930`	Acyltransferase involved in the biosynthesis of lignin.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0500700`	Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to various acyl acceptors.	No verified direct reference in this release
`Os02g0611800`	Hydroxycinnamoyl transferase that catalyzes the transfer of an acyl from p-coumaryol-CoA to various acyl acceptors.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002831 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009809 lignin biosynthetic process Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0009963 positive regulation of flavonoid biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0016020 membrane Cellular Component

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0047172 shikimate O-hydroxycinnamoyltransferase activity Molecular Function

GO:0047205 quinate O-hydroxycinnamoyltransferase activity Molecular Function

GO:0050266 rosmarinate synthase activity Molecular Function

GO:0050734 hydroxycinnamoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G48930

dosa:Os02g0611800

dosa:Os04g0500700

nta:107796658

osa:4336306

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.665

Rank 1 · LXL04_002831 · OH-1004

Nucleus0.249

Rank 2 · LXL04_002831 · OH-1004

Endoplasmic reticulum0.105

Rank 3 · LXL04_002831 · OH-1004

Plastid0.080

Rank 4 · LXL04_002831 · OH-1004

Cell membrane0.074

Rank 5 · LXL04_002831 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458.21Transferase1-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002831	`PF02458.21`	Transferase	1	430	6e-104	348.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI78`	Arabidopsis thaliana	Shikimate O-hydroxycinnamoyltransferase	57.763%	Swiss-Prot	strong database homology
`Q0JBZ8`	Oryza sativa subsp. japonica	Hydroxycinnamoyltransferase 1	53.620%	Swiss-Prot	strong database homology
`Q6K638`	Oryza sativa subsp. japonica	Hydroxycinnamoyltransferase 2	51.919%	Swiss-Prot	strong database homology

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