LXL04_002739 | RubberDandelionOmics

Gene overview

LXL04_002739

Reference: OH-1004 Chr: Chr01 Coordinates: 56775400-56777320 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · LXL04_002739|LXL04_002739|OH1004|cDNA

ATGACCATTTTAAATGATAAGAAAATGGGATCCATGATACCTAAGTTTATATTTATTGGCTATATTTTCTTGTGCTATTTGGAGAATGTCAATGGTGGTGTCACAAGCACTTTCATACGTTCAGAATGGCCATCAGTTGATATTCCTCTTGATAATGAAGTATTTGTGAAACCCAAAGGTCCTAATGCACCAGAGCAGGTACATATCACTCAAGGAGATTATGATGGAAAAGGCATGATCATAATATGGGTGACACCTGA...

CDS

Download CDS FASTA

1389 bp · LXL04_002739|LXL04_002739|OH1004|CDS

ATGACCATTTTAAATGATAAGAAAATGGGATCCATGATACCTAAGTTTATATTTATTGGCTATATTTTCTTGTGCTATTTGGAGAATGTCAATGGTGGTGTCACAAGCACTTTCATACGTTCAGAATGGCCATCAGTTGATATTCCTCTTGATAATGAAGTATTTGTGAAACCCAAAGGTCCTAATGCACCAGAGCAGGTACATATCACTCAAGGAGATTATGATGGAAAAGGCATGATCATAATATGGGTGACACCTGA...

Protein

Download Protein FASTA

462 aa · LXL04_002739|LXL04_002739|OH1004|PROTEIN

MTILNDKKMGSMIPKFIFIGYIFLCYLENVNGGVTSTFIRSEWPSVDIPLDNEVFVKPKGPNAPEQVHITQGDYDGKGMIIIWVTPDEPGSNQVKYGTSEKKYDFTAKGETVKNYTFYNYTSGYIHQCHLENLEYDTKYYYEIGEGDSARSFWFQTPPKIDPNASYKFGIIGDLGQTYNSLSTLEHYIESGAQTVLHVGDLSYADRYKYHDMGVRWDSYGRFVEKIAAYQPWIWTTGNHEIEYMPYMNEVTPFKQYLYRY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002739`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002739

Location Chr01:56775400-56777320 (-)

Description Similar to PAP26: Bifunctional purple acid phosphatase 26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g34850`	Metallo-phosphoesterase involved in phosphate metabolism.	Biochemical and molecular characterization of AtPAP26, a vacuolar purple acid phosphatase up-regulated in phosphate-deprived Arabidopsis suspension cells and seedlings.2006 · DOI: 10.1104/pp.106.087171
`At2g27190`	Fe(3+)-Zn(2+) purple acid phosphatase 12.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002739 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0051174 regulation of phosphorus metabolic process Biological Process

GO:0055062 phosphate ion homeostasis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005775 vacuolar lumen Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009536 plastid Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT2G27190

ath:AT5G34850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.329

Rank 1 · LXL04_002739 · OH-1004

Extracellular0.305

Rank 2 · LXL04_002739 · OH-1004

Cell membrane0.191

Rank 3 · LXL04_002739 · OH-1004

Cytoplasm0.162

Rank 4 · LXL04_002739 · OH-1004

Endoplasmic reticulum0.110

Rank 5 · LXL04_002739 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16656.12Pur_ac_phosph_N64-155 aa

PF00149.34Metallophos167-364 aa

PF14008.12Metallophos_C390-450 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002739	`PF16656.12`	Pur_ac_phosph_N	64	155	5.7e-22	78.8
LXL04_002739	`PF00149.34`	Metallophos	167	364	2.8e-25	90.6
LXL04_002739	`PF14008.12`	Metallophos_C	390	450	3e-22	79.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949Y3`	Arabidopsis thaliana	Bifunctional purple acid phosphatase 26	73.128%	Swiss-Prot	strong database homology
`Q38924`	Arabidopsis thaliana	Fe(3+)-Zn(2+) purple acid phosphatase 12	57.080%	Swiss-Prot	strong database homology

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