LXL04_002615 | RubberDandelionOmics

Gene overview

LXL04_002615

Reference: OH-1004 Chr: Chr01 Coordinates: 53061867-53063462 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1596 bp · LXL04_002615|LXL04_002615|OH1004|cDNA

ATGGGTCCTTACGATTCTTCTATCTCCGCCGCCGCCGGCTGCAGCTCCTCGTCTTCCTCCGCGTGTTCCAGCTCCACCAAACCACCGCAACCGCCAGATCAGATGGACCACCTTCTTGCCGGCGCAGGCTACAAGGTACGTTCAAATGACCTCCACCAAGTGGCTGAGCGCCTGGAACACCTCGAAAATGTTATGGTGAAATCCTCACCGGTGGAGATCTCAGAGCTTGTACACGACGCTGTTCATTACAACCCCACTGA...

CDS

Download CDS FASTA

1596 bp · LXL04_002615|LXL04_002615|OH1004|CDS

ATGGGTCCTTACGATTCTTCTATCTCCGCCGCCGCCGGCTGCAGCTCCTCGTCTTCCTCCGCGTGTTCCAGCTCCACCAAACCACCGCAACCGCCAGATCAGATGGACCACCTTCTTGCCGGCGCAGGCTACAAGGTACGTTCAAATGACCTCCACCAAGTGGCTGAGCGCCTGGAACACCTCGAAAATGTTATGGTGAAATCCTCACCGGTGGAGATCTCAGAGCTTGTACACGACGCTGTTCATTACAACCCCACTGA...

Protein

Download Protein FASTA

531 aa · LXL04_002615|LXL04_002615|OH1004|PROTEIN

MGPYDSSISAAAGCSSSSSSACSSSTKPPQPPDQMDHLLAGAGYKVRSNDLHQVAERLEHLENVMVKSSPVEISELVHDAVHYNPTDLASWVDSLLTELNTNPPVPVAVPTDIPDLHPFPANINVYSNNPPPLNNEFSQQVTTPLEEDVSIRLVHVLMTCAEAVQRGDLPLASLLIDDLQTLLGRVNSGCGIGKVGSFFIDALSRRIVNSPQNSVVQEELSAYENEMLYHHYYEACPYLKFAHFTANQAILEAFDGQDCV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002615`
TK1151 ID	TkA01G435660
OH-1004 ID	LXL04_002615
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 70.433 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002615

Location Chr01:53061867-53063462 (-)

Description Similar to GAI: DELLA protein GAI

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14920`	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0646300`	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway.	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.2005 · DOI: 10.1111/j.1365-313x.2005.02562.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002615 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006808 regulation of nitrogen utilization Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0009939 positive regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010187 negative regulation of seed germination Biological Process

KEGG gene cross-reference

ath:AT1G14920

dosa:Os01g0646300

mtr:25489240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.746

Rank 1 · LXL04_002615 · OH-1004

Cytoplasm0.290

Rank 2 · LXL04_002615 · OH-1004

Cell membrane0.057

Rank 3 · LXL04_002615 · OH-1004

Plastid0.042

Rank 4 · LXL04_002615 · OH-1004

Endoplasmic reticulum0.037

Rank 5 · LXL04_002615 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12041.14DELLA36-103 aa

PF03514.21GRAS153-515 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002615	`PF12041.14`	DELLA	36	103	1.7e-29	102.2
LXL04_002615	`PF03514.21`	GRAS	153	515	4.7e-124	414.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LQT8`	Arabidopsis thaliana	DELLA protein GAI	47.767%	Swiss-Prot	moderate database homology
`B7F9I5`	Oryza sativa subsp. japonica	Protein SLENDER RICE1-LIKE 1	60.743%	Swiss-Prot	strong database homology

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