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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_002605
Reference: OH-1004 Chr: Chr01 Coordinates: 52805824-52809989 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1785 bp · LXL04_002605|LXL04_002605|OH1004|cDNA

ATGGCGCAATCTCAACAACAACCGCCGACCATGGATGCTGATACGATGCTGGATGTTTATATTCTTGATTATCTCATGAAGAAAAACTATGGTAATTCCACAAAGGCATTTGAAGGTGAAGCAAAAGTACCTGCCAATGTTCGTGCCATTGATGCACCTCGTGGTTTCCTCTTCGAATGGTGGACGGTTTTTTGGGATACTTTTATTTCTAGGTACAAGCGACATCAAGGCTCCATGGAACCTTCCAATGAGGTTGTTAG...

CDS

Download CDS FASTA

1785 bp · LXL04_002605|LXL04_002605|OH1004|CDS

ATGGCGCAATCTCAACAACAACCGCCGACCATGGATGCTGATACGATGCTGGATGTTTATATTCTTGATTATCTCATGAAGAAAAACTATGGTAATTCCACAAAGGCATTTGAAGGTGAAGCAAAAGTACCTGCCAATGTTCGTGCCATTGATGCACCTCGTGGTTTCCTCTTCGAATGGTGGACGGTTTTTTGGGATACTTTTATTTCTAGGTACAAGCGACATCAAGGCTCCATGGAACCTTCCAATGAGGTTGTTAG...

Protein

Download Protein FASTA

594 aa · LXL04_002605|LXL04_002605|OH1004|PROTEIN

MAQSQQQPPTMDADTMLDVYILDYLMKKNYGNSTKAFEGEAKVPANVRAIDAPRGFLFEWWTVFWDTFISRYKRHQGSMEPSNEVVRVPHQQQGGQHQSQSFNPNNVNLGKNPWIAEASTLMKQPVPPKQWFGDNTAFIMSHMNSIHQQPIEHQKQAMVPRHDINSLTNPMINPSAQLPEGIPTGPHGGINTMPLRGWPLTQHGLEQIQTRIHRQNEGQINPSNSMDRKRKQPMIPIGVPNTSLPPNAVGMFSNNSREVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_002605
TK1151 IDTkA01G436440
OH-1004 IDLXL04_002605
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_002605
LocationChr01:52805824-52809989 (-)
DescriptionSimilar to LUG: Transcriptional corepressor LEUNIG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32551 Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development.
The rotunda2 mutants identify a role for the LEUNIG gene in vegetative leaf morphogenesis.2004 · DOI: 10.1093/jxb/erh165
At2g32700 May act as a transcriptional corepressor-complex subunit that represses abiotic stress-related genes.
The Arabidopsis transcription factor LUH/MUM1 is required for extrusion of seed coat mucilage.2011 · DOI: 10.1104/pp.111.172023
At5g08390 May participate in a complex which severs microtubules in an ATP-dependent manner (By similarity). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002605 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006974 DNA damage response Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009620 response to fungus Biological Process
GO:0009624 response to nematode Biological Process
GO:0009733 response to auxin Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
KEGG gene cross-reference
ana:alr3466
ath:AT2G32700
ath:AT4G32551
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.925
Rank 1 · LXL04_002605 · OH-1004
Cytoplasm0.159
Rank 2 · LXL04_002605 · OH-1004
Cell membrane0.023
Rank 3 · LXL04_002605 · OH-1004
Mitochondrion0.012
Rank 4 · LXL04_002605 · OH-1004
Endoplasmic reticulum0.010
Rank 5 · LXL04_002605 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08513.18LisH16-41 aa
PF30097.1LisH_SSDP17-71 aa
PF23381.2Beta-prop_IFT122_1st280-371 aa
PF24807.2WD40_CDC20-Fz287-440 aa
PF25391.2WD40_Gbeta288-437 aa
PF24817.2WD40_WDHD1_1st293-387 aa
PF25171.2Beta-prop_WDR36-Utp21_1st304-438 aa
PF23098.2Beta-prop_NOL10_N306-433 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_002605PF08513.18LisH16415.2e-0626.9
LXL04_002605PF30097.1LisH_SSDP17715.5e-2175.4
LXL04_002605PF23381.2Beta-prop_IFT122_1st2803718.1e-44150.7
LXL04_002605PF24807.2WD40_CDC20-Fz2874401.5e-2384.2
LXL04_002605PF25391.2WD40_Gbeta2884375.6e-1039.5
LXL04_002605PF24817.2WD40_WDHD1_1st2933872.2e-28100.0
LXL04_002605PF25171.2Beta-prop_WDR36-Utp21_1st3044381.5e-1351.6
LXL04_002605PF23098.2Beta-prop_NOL10_N3064332.5e-0937.5
LXL04_002605PF24814.2WD40_Prp193093893.4e-35122.2
LXL04_002605PF25173.2Beta-prop_WDR3_1st3134411.3e-32113.7
LXL04_002605PF24796.2WDR553133884.6e-1452.9
LXL04_002605PF24782.3WD40_MABP1-WDR62_2nd3134123.9e-1246.5
LXL04_002605PF25175.2Beta-prop_WDR53144401.1e-43150.3
LXL04_002605PF00400.39WD403153412e-35120.4
LXL04_002605PF23414.2Beta-prop_EML_23154322.2e-2280.4
LXL04_002605PF24780.2WD40_MABP1-WDR62_1st3154389.7e-0832.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FUY2Arabidopsis thalianaTranscriptional corepressor LEUNIG44.712%Swiss-Protmoderate database homology
O48847Arabidopsis thalianaTranscriptional corepressor LEUNIG_HOMOLOG45.058%Swiss-Protmoderate database homology
F4KB17Arabidopsis thalianaKatanin p80 WD40 repeat-containing subunit B1 homolog KTN80.325.902%Swiss-Protweak database homology

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