LXL04_002461 | RubberDandelionOmics

Gene overview

LXL04_002461

Reference: OH-1004 Chr: Chr01 Coordinates: 49204704-49206382 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1378 bp · LXL04_002461|LXL04_002461|OH1004|cDNA

ATGGCAATAAAGATCGTAAAAGCACAACCACCTGTTGAGTTATCAAAGATTGCAGTTTCAGAAACCCATGGAGAAAACTCTCCATATTTTGCTGGATGGAAAGCCTATGATGAAAACCCGTATCATGAAAAACATAACCCTCATGGGGTTATACAAATGGGGTTAGCAGAAAATCAAGTTTCATTCGATTTGCTTGAAGAATACTTGGCTTCTAATCAAGAAGCAGCAAGTTGGGGCAAAAAGGTTTCTGGTTTTAGAGA...

CDS

Download CDS FASTA

1341 bp · LXL04_002461|LXL04_002461|OH1004|CDS

ATGGCAATAAAGATCGTAAAAGCACAACCACCTGTTGAGTTATCAAAGATTGCAGTTTCAGAAACCCATGGAGAAAACTCTCCATATTTTGCTGGATGGAAAGCCTATGATGAAAACCCGTATCATGAAAAACATAACCCTCATGGGGTTATACAAATGGGGTTAGCAGAAAATCAAGTTTCATTCGATTTGCTTGAAGAATACTTGGCTTCTAATCAAGAAGCAGCAAGTTGGGGCAAAAAGGTTTCTGGTTTTAGAGA...

Protein

Download Protein FASTA

446 aa · LXL04_002461|LXL04_002461|OH1004|PROTEIN

MAIKIVKAQPPVELSKIAVSETHGENSPYFAGWKAYDENPYHEKHNPHGVIQMGLAENQVSFDLLEEYLASNQEAASWGKKVSGFRENALFQDYHGLLTFRKAMASFMEQVRGGKAKFDPERVVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVEIVPIHCESSNKFQITPEALESAYDHARSMNMKVRGVLITNPSNPLGATIQRKFLEQILDFVTRKNIHLVSDEIYSGSVFHSDEFVSIAEILE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002461`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002461

Location Chr01:49204704-49206382 (+)

Description Similar to ACS7: 1-aminocyclopropane-1-carboxylate synthase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26200`	1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.	No verified direct reference in this release
`At4g37770`	1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0196600`	Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants.	No verified direct reference in this release
`Os01g0192900`	Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants.	No verified direct reference in this release
`Os05g0319200`	Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002461 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006520 amino acid metabolic process Biological Process

GO:0009693 ethylene biosynthetic process Biological Process

GO:0009835 fruit ripening Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0008483 transaminase activity Molecular Function

GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT4G26200

ath:AT4G37770

dosa:Os01g0192900

osa:107275635

osa:107275928

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.637

Rank 1 · LXL04_002461 · OH-1004

Nucleus0.235

Rank 2 · LXL04_002461 · OH-1004

Peroxisome0.100

Rank 3 · LXL04_002461 · OH-1004

Mitochondrion0.081

Rank 4 · LXL04_002461 · OH-1004

Plastid0.078

Rank 5 · LXL04_002461 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155.28Aminotran_1_251-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002461	`PF00155.28`	Aminotran_1_2	51	430	3.6e-98	329.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STR4`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate synthase 7	77.726%	Swiss-Prot	strong database homology
`Q9T065`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate synthase 8	61.502%	Swiss-Prot	strong database homology
`A0A0P0WIY3`	Oryza sativa subsp. japonica	1-aminocyclopropane-1-carboxylate synthase 3	64.430%	Swiss-Prot	strong database homology
`A0A0P0UZP7`	Oryza sativa subsp. japonica	1-aminocyclopropane-1-carboxylate synthase 5	65.986%	Swiss-Prot	strong database homology
`Q5W6F9`	Oryza sativa subsp. japonica	1-aminocyclopropane-1-carboxylate synthase 4	62.092%	Swiss-Prot	strong database homology

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