Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1098 bp · LXL04_002322|LXL04_002322|OH1004|cDNA
ATGGCGGCCTTCTCAACGGTGTCAGCCCTCGTAGTTCTGGTTATCGTGTGTGCCGCCGGGGTACGTGCGACGGAGACCGGATCAACTTTTTCCGACGAGAATCCGATCAGACAAGTGGTGTCCGATGGATTACGAGAGCTTGAGACTACTGTTCTCCAGGTTATTGGTCAAACTCGTCATGCTCTCACCTTCGCTCGATTCGCTCACAGGTACGGGAAGAAATACGAGACTGCCGATGAGATGAAACAGAGGTTCTCGAT...
1098 bp · LXL04_002322|LXL04_002322|OH1004|CDS
ATGGCGGCCTTCTCAACGGTGTCAGCCCTCGTAGTTCTGGTTATCGTGTGTGCCGCCGGGGTACGTGCGACGGAGACCGGATCAACTTTTTCCGACGAGAATCCGATCAGACAAGTGGTGTCCGATGGATTACGAGAGCTTGAGACTACTGTTCTCCAGGTTATTGGTCAAACTCGTCATGCTCTCACCTTCGCTCGATTCGCTCACAGGTACGGGAAGAAATACGAGACTGCCGATGAGATGAAACAGAGGTTCTCGAT...
Protein
Download Protein FASTA365 aa · LXL04_002322|LXL04_002322|OH1004|PROTEIN
MAAFSTVSALVVLVIVCAAGVRATETGSTFSDENPIRQVVSDGLRELETTVLQVIGQTRHALTFARFAHRYGKKYETADEMKQRFSIFVKSLETIRSHNKKGLSYTMGVNEFSDMTFEEFSKQKLGAAQNCSATKNGNHKLTDAVLPLTQDWRKTGIVTPVKNQGSCGSCWTFSTTGALEAAYAQAFGKSVSLSEQQLVDCAGDFNNFGCHGGLPSQAYEYIKYNGGLDTEETYPYTGKDGVCKYKSENSAVKVIDSVNI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002322 |
|---|---|
| TK1151 ID | TkAUNG014350 |
| OH-1004 ID | LXL04_002322 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002322 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:46242753-46244990 (+) | |||||||||
| Description | Similar to At3g45310: Thiol protease aleurain-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0006955 immune response Biological Process GO:0009699 phenylpropanoid biosynthetic process Biological Process GO:0033494 ferulate metabolic process Biological Process GO:0042189 vanillin biosynthetic process Biological Process GO:0051603 proteolysis involved in protein catabolic process Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005615 extracellular space Cellular Component GO:0005764 lysosome Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component | |||||||||
| KEGG gene cross-reference | ag:AID23868 ath:AT3G45310 ath:AT5G60360 mtr:25494167 sly:101252505 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08246.18Inhibitor_I2964-120 aaPF00112.30Peptidase_C1146-361 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002322 | PF08246.18 | Inhibitor_I29 | 64 | 120 | 3.8e-18 | 66.3 |
| LXL04_002322 | PF00112.30 | Peptidase_C1 | 146 | 361 | 1.8e-78 | 264.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.