LXL04_002310 | RubberDandelionOmics

Gene overview

LXL04_002310

Reference: OH-1004 Chr: Chr01 Coordinates: 45891735-45892595 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

682 bp · LXL04_002310|LXL04_002310|OH1004|cDNA

AAAGATTAATTGTTGTTACAAATCAAAACCTTCTAATAAGGGATTCaagaaaatgactacaaaagTGAAAGATATGACGGTGGTAAGTAAGCTATTTTGTTCATCGACTCAAGTTGTTCTAGGGGTTCGCTCACGGCCTCATGTTGTCGGTGGTGGTGGCTTTGTTGTCACAGATTTGTCTAGCCATGAGGTCGTGTTCAGGGTCGATGGTTGTGGTGTTCTTGGCAAAAAGGACCAGATGACTCTCACTGACGCTTACC...

CDS

Download CDS FASTA

630 bp · LXL04_002310|LXL04_002310|OH1004|CDS

ATGACTACAAAAGTGAAAGATATGACGGTGGTAAGTAAGCTATTTTGTTCATCGACTCAAGTTGTTCTAGGGGTTCGCTCACGGCCTCATGTTGTCGGTGGTGGTGGCTTTGTTGTCACAGATTTGTCTAGCCATGAGGTCGTGTTCAGGGTCGATGGTTGTGGTGTTCTTGGCAAAAAGGACCAGATGACTCTCACTGACGCTTACCAAAACCCTTTACTTCTCATCCGTCTAAAGGCAGGCATAGTTGAAGCATTAAG...

Protein

Download Protein FASTA

209 aa · LXL04_002310|LXL04_002310|OH1004|PROTEIN

MTTKVKDMTVVSKLFCSSTQVVLGVRSRPHVVGGGGFVVTDLSSHEVVFRVDGCGVLGKKDQMTLTDAYQNPLLLIRLKAGIVEALSLRRQWGSYTPGFVGSHQKLLFTLKDPKGCLANNRPIRVSIEQKDQSIYCKNFQIKGYFPDRECSIVDSGGNVIAQVTVSKEMNEVMEKKDVYHVVVNAGIDQAFVIGVIAILDYIHNGSTRC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002310`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002310

Location Chr01:45891735-45892595 (-)

Description Similar to At2g05910: Protein LURP-one-related 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g05910`	Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.	No verified direct reference in this release
`At5g20640`	Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.	No verified direct reference in this release
`At3g11740`	Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.	No verified direct reference in this release
`At3g15810`	Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.	No verified direct reference in this release
`At1g80120`	Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002310 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G80120

ath:AT2G05910

ath:AT3G11740

ath:AT3G15810

ath:AT5G20640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.454

Rank 1 · LXL04_002310 · OH-1004

Nucleus0.365

Rank 2 · LXL04_002310 · OH-1004

Cell membrane0.255

Rank 3 · LXL04_002310 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_002310 · OH-1004

Lysosome / Vacuole0.073

Rank 5 · LXL04_002310 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04525.20LOR23-200 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002310	`PF04525.20`	LOR	23	200	8e-28	98.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUF7`	Arabidopsis thaliana	Protein LURP-one-related 6	51.485%	Swiss-Prot	strong database homology
`A0MFH4`	Arabidopsis thaliana	Protein LURP-one-related 16	47.573%	Swiss-Prot	moderate database homology
`Q9SF24`	Arabidopsis thaliana	Protein LURP-one-related 10	26.396%	Swiss-Prot	weak database homology
`Q9LVZ8`	Arabidopsis thaliana	Protein LURP-one-related 12	25.366%	Swiss-Prot	weak database homology
`Q9SSC7`	Arabidopsis thaliana	Protein LURP-one-related 5	29.146%	Swiss-Prot	weak database homology

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