LXL04_002303 | RubberDandelionOmics

Gene overview

LXL04_002303

Reference: OH-1004 Chr: Chr01 Coordinates: 45743490-45745640 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2070 bp · LXL04_002303|LXL04_002303|OH1004|cDNA

ATGTCCATTGTTAGTCGCCGCCGTTACCACTGCCTCCTCCTCCTCCTTTccattttccaaattttcccTCCATGTCTCTCCTTTCGTCACTCCCCCGCTGTTTCCCTCCTCCAGTTCAAAGAATCATTTTCCAAATCCGATTCTTTATCCAATTGGAAAGACGATGGATCCCACCCCTGCGACCCCAATAATGTGTGGATCGGAATCATATGTTCCGATGGCTTAATTAACACCATCAACCTCGCCGGCATGGATCTCCG...

CDS

Download CDS FASTA

2070 bp · LXL04_002303|LXL04_002303|OH1004|CDS

ATGTCCATTGTTAGTCGCCGCCGTTACCACTGCCTCCTCCTCCTCCTTTCCATTTTCCAAATTTTCCCTCCATGTCTCTCCTTTCGTCACTCCCCCGCTGTTTCCCTCCTCCAGTTCAAAGAATCATTTTCCAAATCCGATTCTTTATCCAATTGGAAAGACGATGGATCCCACCCCTGCGACCCCAATAATGTGTGGATCGGAATCATATGTTCCGATGGCTTAATTAACACCATCAACCTCGCCGGCATGGATCTCCG...

Protein

Download Protein FASTA

689 aa · LXL04_002303|LXL04_002303|OH1004|PROTEIN

MSIVSRRRYHCLLLLLSIFQIFPPCLSFRHSPAVSLLQFKESFSKSDSLSNWKDDGSHPCDPNNVWIGIICSDGLINTINLAGMDLRGQPDISTLESIDGLVTISLDGNSLVGPMPEINRLPSLKAFYAGGNLFSGVIPSDFFQTLGSLKKLWLQNNHFSGQIPISVGQLPNLKELHLEYNQFSGPIPEFSDPDVLINIDLSDNRLQGEIPKSLQKFDSQAFDNNADLCGGPLKECTPTQREEEDSTYRKSAIPWIILIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002303`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002303

Location Chr01:45743490-45745640 (+)

Description Similar to PRK6: Pollen receptor-like kinase 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20690`	Key receptor for sensing species-specific attractants in cooperation with other pollen receptor-like kinases.	Tip-localized receptors control pollen tube growth and LURE sensing in Arabidopsis.2016 · DOI: 10.1038/nature17413 Structural basis for receptor recognition of pollen tube attraction peptides.2017 · DOI: 10.1038/s41467-017-01323-8
`At3g42880`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	No verified direct reference in this release
`At4g31250`	Probable LRR receptor-like serine/threonine-protein kinase At4g31250.	No verified direct reference in this release
`At5g35390`	Receptor-like kinase involved in the control of pollen germination and pollen tube polar growth.	AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth.2013 · DOI: 10.1093/mp/sss103

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002303 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010183 pollen tube guidance Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0045177 apical part of cell Cellular Component

GO:0090404 pollen tube tip Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT3G42880

ath:AT4G31250

ath:AT5G20690

ath:AT5G35390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.882

Rank 1 · LXL04_002303 · OH-1004

Cytoplasm0.075

Rank 2 · LXL04_002303 · OH-1004

Endoplasmic reticulum0.074

Rank 3 · LXL04_002303 · OH-1004

Nucleus0.052

Rank 4 · LXL04_002303 · OH-1004

Golgi apparatus0.019

Rank 5 · LXL04_002303 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_235-72 aa

PF13855.13LRR_8137-183 aa

PF12799.14LRR_4148-185 aa

PF07714.24PK_Tyr_Ser-Thr416-619 aa

PF00069.32Pkinase416-679 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002303	`PF08263.18`	LRRNT_2	35	72	2.5e-06	28.4
LXL04_002303	`PF13855.13`	LRR_8	137	183	5.3e-07	30.0
LXL04_002303	`PF12799.14`	LRR_4	148	185	6.6e-08	33.3
LXL04_002303	`PF07714.24`	PK_Tyr_Ser-Thr	416	619	1.5e-26	94.0
LXL04_002303	`PF00069.32`	Pkinase	416	679	7.1e-26	91.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q3E991`	Arabidopsis thaliana	Pollen receptor-like kinase 6	44.231%	Swiss-Prot	moderate database homology
`Q9M1L7`	Arabidopsis thaliana	Pollen receptor-like kinase 3	63.051%	Swiss-Prot	weak database homology
`C0LGR9`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At4g31250	35.147%	Swiss-Prot	moderate database homology
`C0LGU0`	Arabidopsis thaliana	Pollen receptor-like kinase 1	34.407%	Swiss-Prot	moderate database homology

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