LXL04_002274 | RubberDandelionOmics

Gene overview

LXL04_002274

Reference: OH-1004 Chr: Chr01 Coordinates: 45023938-45034189 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1203 bp · LXL04_002274|LXL04_002274|OH1004|cDNA

atgcaagtccttgatcttctaaaacatccacaattgtccttgaactttaattcttccttgcatgcatccaatgagttgaatatttcctgtaaaactcatgcaatattgcaaataatacggtatacgggaattatagaaaaagttagcatGTTATGTGATGAAGCAACTAGCGCTCTTGATAGTACAACAGAAACCGAGATTTTAACCGCTTTAAGATCTCTCGCGAATAACCGAACCGCGaaacgtacccgtcacgtaAT...

CDS

Download CDS FASTA

1203 bp · LXL04_002274|LXL04_002274|OH1004|CDS

ATGCAAGTCCTTGATCTTCTAAAACATCCACAATTGTCCTTGAACTTTAATTCTTCCTTGCATGCATCCAATGAGTTGAATATTTCCTGTAAAACTCATGCAATATTGCAAATAATACGGTATACGGGAATTATAGAAAAAGTTAGCATGTTATGTGATGAAGCAACTAGCGCTCTTGATAGTACAACAGAAACCGAGATTTTAACCGCTTTAAGATCTCTCGCGAATAACCGAACCGCGAAACGTACCCGTCACGTAAT...

Protein

Download Protein FASTA

400 aa · LXL04_002274|LXL04_002274|OH1004|PROTEIN

MQVLDLLKHPQLSLNFNSSLHASNELNISCKTHAILQIIRYTGIIEKVSMLCDEATSALDSTTETEILTALRSLANNRTAKRTRHVIWVHLGFLSSHGEHSTIRRPSCFWAIPLKVSHVSTAITCLTGTSISFLGRSHSRALTKPGRVTILLVVGAVHFFTCPNMVVIASVAFWESPIIGLRWNCIGWCRGGEGGLPLVVIFLGSLCLLYHGSLANAFVRETNGKGLSTFKSGRIGSCDMTLDMRGQTPNVPLHFLILRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002274`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002274

Location Chr01:45023938-45034189 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58270`	Performs an essential function in the generation of cytoplasmic iron-sulfur proteins by mediating export of Fe/S cluster precursors synthesized by NFS1 and other mitochondrial proteins.	An allelic mutant series of ATM3 reveals its key role in the biogenesis of cytosolic iron-sulfur proteins in Arabidopsis.2009 · DOI: 10.1104/pp.109.143651 A novel role for Arabidopsis mitochondrial ABC transporter ATM3 in molybdenum cofactor biosynthesis.2010 · DOI: 10.1105/tpc.109.068478

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002274 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006777 Mo-molybdopterin cofactor biosynthetic process Biological Process

GO:0006826 iron ion transport Biological Process

GO:0006879 intracellular iron ion homeostasis Biological Process

GO:0009555 pollen development Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010288 response to lead ion Biological Process

GO:0010380 regulation of chlorophyll biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0048364 root development Biological Process

GO:0051276 chromosome organization Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT5G58270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.336

Rank 1 · LXL04_002274 · OH-1004

Mitochondrion0.262

Rank 2 · LXL04_002274 · OH-1004

Nucleus0.248

Rank 3 · LXL04_002274 · OH-1004

Cell membrane0.114

Rank 4 · LXL04_002274 · OH-1004

Endoplasmic reticulum0.075

Rank 5 · LXL04_002274 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LVM1`	Arabidopsis thaliana	ABC transporter B family member 25, mitochondrial	77.419%	Swiss-Prot	weak database homology

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